ViewGene
Locus Name:
GeneID:
Location:

GeneID:2789
TrivialName: PA14_02580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02580
PAO1 Ortholog Locus:PA0211
Sequence Length:864
Protein Length:287
Start: 230222
Stop: 231085
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03600.1|AE004459_4 (AE004459) malonate decarboxylase beta subunit [Pseudomonas aeruginosa PAO1]
Identities = 287/287 (100%), Positives = 287/287 (100%)
Sequence:
ATGACTGACGTCGCCCGCCTGCTGGCGCTGCGCAGCTTCACCGAACTGGGAGCGCGCCAACGCGCCCGTGCC
CTGCTCGACGCGGGCAGCTTCCGCGAGTTGCTCGATCCCTTCGCCGGCGTGCAGTCACCCTGGCTGGAACGA
CAGGGCATCGTGCCCCAGGCCGACGATGGGGTAGTGGTCGCCCGTGGCCTGCTCGACGGCCAGCCGGCGGTG
CTCGCCGCCATCGAAGGTGCCTTCCAGGGCGGCAGCCTTGGCGAGGTCAGCGGAGCGAAGATCGCCGGCGCG
CTGGAGCTGGCCGCCGAGGACAACCGCAACGGCGTTCCGACCCGGGCCCTGCTGTTGCTGGAAACCGGTGGC
GTGCGCCTGCAGGAAGCCAACCTCGGACTGGCGGCGATCGCCGAGATCCAGGCGGCCATCGTCGATCTGCAG
CGCTACCAGCCGGTGGTGGCGGTGATCGCCGGGCCGGTCGGCTGCTTCGGCGGCATGTCCATCGCCGCCGGG
CTGTGCAGCTACGTGCTGGTGACCCGCGAGGCGCGCCTCGGATTGAACGGTCCGCAGGTGATCGAACAGGAG
GCCGGCATCGCTGAATACGACTCGCGCGACCGGCCGTTCATCTGGAGCCTCACCGGCGGCGAGCAGCGCTTC
GCCAGCGGTCTCGCCGACGCCTACCTGGCCGACGACCTCGATGAGGTACGCACCTCGGTACTCGCGTATTTC
GCCAAGGGCCTGCCGGCACGGCCGCGCTGCCGCCGCGCCGAGGATTACCTGCGGCGGCTGGGCGACCTCGAT
ACCGCCGAGCAACCGGATGCCGCCGGCGTGCGCCGGCTGTACCAGGGGCTGGGCCAAGGAGATGCAACATGA
Translation:
MTDVARLLALRSFTELGARQRARALLDAGSFRELLDPFAGVQSPWLERQGIVPQADDGVVVARGLLDGQPAV
LAAIEGAFQGGSLGEVSGAKIAGALELAAEDNRNGVPTRALLLLETGGVRLQEANLGLAAIAEIQAAIVDLQ
RYQPVVAVIAGPVGCFGGMSIAAGLCSYVLVTREARLGLNGPQVIEQEAGIAEYDSRDRPFIWSLTGGEQRF
ASGLADAYLADDLDEVRTSVLAYFAKGLPARPRCRRAEDYLRRLGDLDTAEQPDAAGVRRLYQGLGQGDAT*
AnnotationID:2797GeneID:2789
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 12:12:54
Gene Name:mdcD
Confidence Code:2
GeneProduct: malonate decarboxylase beta subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0777
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58511.1| (AE016874) malonate decarboxylase, beta subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 283

 Score =  405 bits (1042), Expect = e-112
 Identities = 206/280 (73%), Positives = 234/280 (83%)

>dbj|BAA36207.1| (AB017138) beta subunit of malonate decarboxylase [Pseudomonas
           putida]
          Length = 282

 Score =  390 bits (1001), Expect = e-108
 Identities = 206/284 (72%), Positives = 232/284 (81%), Gaps = 3/284 (1%)

>gb|AAC45456.1| (U95087) MdcD [Klebsiella pneumoniae]
          Length = 277

 Score =  379 bits (972), Expect = e-104
 Identities = 189/268 (70%), Positives = 225/268 (83%)






 
Structural Features:
COG0777, AccD, Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
CD-Length = 294 residues,  84.0% aligned
Score =  215 bits (549), Expect = 5e-57
Identities = 79/264 (29%), Positives = 115/264 (43%), Gaps = 29/264 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33576




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2789_cdd.html


    		




 
URL:

















    ReferenceID:35465




  
Author/Investigator(s):
        Chohnan S, Kurusu Y, Nishihara H, Takamura Y.





  
Title:
        Cloning and characterization of mdc genes encoding malonate decarboxylase from Pseudomonas putida.




  
PubMed:
        10339824


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1999 May 15;174(2):311-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10339824

















    ReferenceID:35469




  
Author/Investigator(s):
        Koo JH, Jung SB, Byun HS, Kim YS.





  
Title:
        Cloning and sequencing of genes encoding malonate decarboxylase in Acinetobacter calcoaceticus.




  
PubMed:
        9375791


MedLine:
        




    
Source:
Biochim Biophys Acta. 1997 Oct 9;1354(1):49-54.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9375791









           
Homologs By Global Alignment 

           

       



     
Gene ID:2789
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4532
                           PA0211_tr
                           translation of PA0211
                           287
                           99.99
                           99.99
                           0
                           1437.0
     

     
     
130529
                           gb|AAG03600.1|AE004459_4
                           (AE004459) malonate decarboxylase beta subunit [Pseudomonas aeruginosa PAO1]
                           287
                           99.99
                           99.99
                           0
                           1437.0
     

     
     
130530
                           gb|AAO58511.1|
                           (AE016874) malonate decarboxylase, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           287
                           71.77
                           81.53
                           4
                           1038.0
     

     
     
130531
                           dbj|BAA36207.1|
                           (AB017138) beta subunit of malonate decarboxylase [Pseudomonas putida]
                           288
                           71.52
                           80.55
                           7
                           1005.0
     

     
     
130532
                           gb|AAC45456.1|
                           (U95087) MdcD [Klebsiella pneumoniae]
                           287
                           65.85
                           79.09
                           10
                           960.0
     

     






      

          
GC ORFID: 45791How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0211Glimmer Score: 

          
Start: 6031563Stop: 6032426

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0211 translation of PA0211Homolog Bit Score 558.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3320 (ORF: BLASTX 404.0), t_PA0211 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGACGTCGCCCGCCTGCTGGCGCTGCGCAGCTTCACCGAACTGGGAGCGCGCCAACGCGCCCGTGCC 
CTGCTCGACGCGGGCAGCTTCCGCGAGTTGCTCGATCCCTTCGCCGGCGTGCAGTCACCCTGGCTGGAACGA 
CAGGGCATCGTGCCCCAGGCCGACGATGGGGTAGTGGTCGCCCGTGGCCTGCTCGACGGCCAGCCGGCGGTG 
CTCGCCGCCATCGAAGGTGCCTTCCAGGGCGGCAGCCTTGGCGAGGTCAGCGGAGCGAAGATCGCCGGCGCG 
CTGGAGCTGGCCGCCGAGGACAACCGCAACGGCGTTCCGACCCGGGCCCTGCTGTTGCTGGAAACCGGTGGC 
GTGCGCCTGCAGGAAGCCAACCTCGGACTGGCGGCGATCGCCGAGATCCAGGCGGCCATCGTCGATCTGCAG 
CGCTACCAGCCGGTGGTGGCGGTGATCGCCGGGCCGGTCGGCTGCTTCGGCGGCATGTCCATCGCCGCCGGG 
CTGTGCAGCTACGTGCTGGTGACCCGCGAGGCGCGCCTCGGATTGAACGGTCCGCAGGTGATCGAACAGGAG 
GCCGGCATCGCTGAATACGACTCGCGCGACCGGCCGTTCATCTGGAGCCTCACCGGCGGCGAGCAGCGCTTC 
GCCAGCGGTCTCGCCGACGCCTACCTGGCCGACGACCTCGATGAGGTACGCACCTCGGTACTCGCGTATTTC 
GCCAAGGGCCTGCCGGCACGGCCGCGCTGCCGCCGCGCCGAGGATTACCTGCGGCGGCTGGGCGACCTCGAT 
ACCGCCGAGCAACCGGATGCCGCCGGCGTGCGCCGGCTGTACCAGGGGCTGGGCCAAGGAGATGCAACATGA