ViewGene
Locus Name:
GeneID:
Location:

GeneID:2788
TrivialName: PA14_73330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73330
PAO1 Ortholog Locus:PA5562
Sequence Length:873
Protein Length:290
Start: 6529100
Stop: 6528228
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08947.1|AE004968_1 (AE004968) chromosome partitioning protein Spo0J [Pseudomonas aeruginosa PAO1]
Identities = 289/290 (99%), Positives = 289/290 (99%)
Sequence:
ATGGCAGCCAAGAAACGTGGACTGGGACGCGGGCTCGATGCCCTGCTGGGCGGCTCGAGTCCCGCCAAACTG
CAGGAAGAAGCCGTACAGGCCGACCGCCGCGAGTTGCAGCAGATCCCCCTCGACCTGATGCAGCGCGGCAAG
TACCAGCCGCGTCGCGACATGGACCCTCAGGCGCTGGAGGAACTGGCGCAGTCGATCAAGGCCCAGGGCGTG
ATGCAGCCCATCGTGGTACGGCCGATCGGCAATGGCCGCTACGAGATCATCGCCGGCGAGCGGCGCTGGCGG
GCCAGCCAGCAGGCCGGACTGGAAAAGATCCCGGCGCTGGTGCGCGACGTGCCGGACGAAGCGGCCATCGCC
ATGGCGCTGATCGAGAACATCCAGCGCGAGGACCTCAATCCGATCGAGGAAGCCGCTGCCCTGCAACGCCTG
CAGCAGGAGTTCCAGCTGACCCAGCAGCAGGTCGCGGAAGCGGTCGGCAAGTCGCGCGCGACCATTACCAAC
CTGCTGCGCCTGATCGGCCTGCCGGAAGAGATCAAGACCCTGCTTTCCCATGGCGACCTGGAAATGGGCCAT
GCCCGTGCGCTCCTCGGTCTGCCGGCAGAACGGCAGGTGGAAGGGGCGCGACATGTTGTCGCACATGGGCTG
ACCGTACGTCAGACCGAAGCCCTGGTTCGGCAGTGGACGCATGCCCCGGGCAAGCCTGCGGGACCGGTCAAG
AGCGACCCGGACATCGCCCGCCTGGAACAGCGCCTGGCCGAGCGCCTGGGCGCTTCGGTGCAGATCCGGCAT
GGTCAGAAGGGCAAGGGACAGTTGGTCATCCGCTACAGCTCCCTGGATGAACTGCAGGGCGTTCTCGCCCAC
ATCCGTTGA
Translation:
MAAKKRGLGRGLDALLGGSSPAKLQEEAVQADRRELQQIPLDLMQRGKYQPRRDMDPQALEELAQSIKAQGV
MQPIVVRPIGNGRYEIIAGERRWRASQQAGLEKIPALVRDVPDEAAIAMALIENIQREDLNPIEEAAALQRL
QQEFQLTQQQVAEAVGKSRATITNLLRLIGLPEEIKTLLSHGDLEMGHARALLGLPAERQVEGARHVVAHGL
TVRQTEALVRQWTHAPGKPAGPVKSDPDIARLEQRLAERLGASVQIRHGQKGKGQLVIRYSSLDELQGVLAH
IR*
AnnotationID:2796GeneID:2788
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:30
Gene Name:parB
Confidence Code:2
GeneProduct:chromosome partitioning protein
Cell Localization:()
Synonyms:spo0J
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1475
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59020.1| (AE016876) ParB family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 290

 Score =  467 bits (1201), Expect = e-131
 Identities = 239/290 (82%), Positives = 261/290 (90%)

>gb|AAN65635.1|AE016190_1 (AE016774) chromosome partitioning protein ParB [Pseudomonas putida
           KT2440]
          Length = 290

 Score =  452 bits (1164), Expect = e-127
 Identities = 230/290 (79%), Positives = 257/290 (88%)

>gb|AAO91418.1| (AE016966) ParB-like partition protein [Coxiella burnetii RSA 493]
          Length = 288

 Score =  313 bits (802), Expect = 8e-85
 Identities = 157/287 (54%), Positives = 214/287 (74%), Gaps = 1/287 (0%)






 
Structural Features:
COG1475, Spo0J, Predicted transcriptional regulators [Transcription]
CD-Length = 240 residues,  99.6% aligned
Score =  136 bits (343), Expect = 3e-33
Identities = 105/254 (41%), Positives = 147/254 (57%), Gaps = 17/254 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5579




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33345




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2788_cdd.html


    		




 
URL:

















    ReferenceID:35561




  
Author/Investigator(s):
        Nardmann J, Messer W.





  
Title:
        Identification and characterization of the dnaA upstream region of Thermus thermophilus.




  
PubMed:
        11167017


MedLine:
        




    
Source:
Gene. 2000 Dec 31;261(2):299-303.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11167017









           
Homologs By Global Alignment 

           

       



     
Gene ID:2788
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4531
                           PA5562_tr
                           translation of PA5562
                           290
                           99.65
                           99.65
                           0
                           1439.0
     

     
     
130456
                           gb|AAG08947.1|AE004968_1
                           (AE004968) chromosome partitioning protein Spo0J [Pseudomonas aeruginosa PAO1]
                           290
                           99.65
                           99.65
                           0
                           1439.0
     

     
     
130457
                           gb|AAO59020.1|
                           (AE016876) ParB family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           290
                           82.41
                           90.00
                           0
                           1201.0
     

     
     
130458
                           gb|AAN65635.1|AE016190_1
                           (AE016774) chromosome partitioning protein ParB [Pseudomonas putida KT2440]
                           290
                           79.31
                           88.62
                           0
                           1164.0
     

     
     
130459
                           emb|CAA44422.1|
                           (X62540) unnamed protein product [Pseudomonas putida]
                           290
                           79.31
                           88.62
                           0
                           1164.0
     

     






      

          
GC ORFID: 45790How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5562Glimmer Score: 

          
Start: 5792789Stop: 5791917

          
Length: 873


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5562 translation of PA5562Homolog Bit Score 558.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4124 (ORF: BLASTX 467.0), t_PA5562 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAGCCAAGAAACGTGGACTGGGACGCGGGCTCGATGCCCTGCTGGGCGGCTCGAGTCCCGCCAAACTG 
CAGGAAGAAGCCGTACAGGCCGACCGCCGCGAGTTGCAGCAGATCCCCCTCGACCTGATGCAGCGCGGCAAG 
TACCAGCCGCGTCGCGACATGGACCCTCAGGCGCTGGAGGAACTGGCGCAGTCGATCAAGGCCCAGGGCGTG 
ATGCAGCCCATCGTGGTACGGCCGATCGGCAATGGCCGCTACGAGATCATCGCCGGCGAGCGGCGCTGGCGG 
GCCAGCCAGCAGGCCGGACTGGAAAAGATCCCGGCGCTGGTGCGCGACGTGCCGGACGAAGCGGCCATCGCC 
ATGGCGCTGATCGAGAACATCCAGCGCGAGGACCTCAATCCGATCGAGGAAGCCGCTGCCCTGCAACGCCTG 
CAGCAGGAGTTCCAGCTGACCCAGCAGCAGGTCGCGGAAGCGGTCGGCAAGTCGCGCGCGACCATTACCAAC 
CTGCTGCGCCTGATCGGCCTGCCGGAAGAGATCAAGACCCTGCTTTCCCATGGCGACCTGGAAATGGGCCAT 
GCCCGTGCGCTCCTCGGTCTGCCGGCAGAACGGCAGGTGGAAGGGGCGCGACATGTTGTCGCACATGGGCTG 
ACCGTACGTCAGACCGAAGCCCTGGTTCGGCAGTGGACGCATGCCCCGGGCAAGCCTGCGGGACCGGTCAAG 
AGCGACCCGGACATCGCCCGCCTGGAACAGCGCCTGGCCGAGCGCCTGGGCGCTTCGGTGCAGATCCGGCAT 
GGTCAGAAGGGCAAGGGACAGTTGGTCATCCGCTACAGCTCCCTGGATGAACTGCAGGGCGTTCTCGCCCAC 
ATCCGTTGA