ViewGene
Locus Name:
GeneID:
Location:

GeneID:2787
TrivialName: PA14_58080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58080
PAO1 Ortholog Locus:PA4475
Sequence Length:849
Protein Length:282
Start: 5168339
Stop: 5167491
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07863.1|AE004861_4 (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 280/282 (99%), Positives = 280/282 (99%)
Sequence:
ATGTCCATTGCCGTGATCCAGATGGTCAGCCAGGACGACGTGACGGCCAACCTGGCCGCCGCCCGTCGCCTG
CTGGAACAGGCCGCCGAGGGTGGGGCGCGGCTCGCCGTGTTGCCGGAAAACTTCGCCGCCATGGGCCGGCGC
GACCTGGCCGAACTGGGGCGCGCCGAGGCGCGGGGGAACGGGCCGATCCTGTCGTGGTTGAATTCTGCCGCT
CGCGACCTCAGGTTGTGGATAGTCGCTGGAACGCTGCCGCTGCCGCCGGATGGGCAACCCGAGGCGAAGGCG
AATGCCTGTTCGCTGCTGATTGACGAGCACGGAGAGCGGGTCGCCCGCTACGACAAGCTGCACCTGTTCGAT
GTGGACGTAGCCGATGCGCGGGGCCGCTATCGTGAATCCGACGACTATGCTTTCGGTCAGAAGATCGTGGTG
GCGGATACGCCGGTCGGTCGCCTTGGCCTGACGGTCTGCTACGACCTGCGTTTTCCGGAACTCTATACCGCG
CTGCGCGAGGCCGGCGCAGAGCTGATCACGGCGCCGTCGGCGTTCACCGCGGTGACCGGCGCGGCGCACTGG
CAAGTGCTGGTCCGCGCCCGTGCCATCGAGACCCAGTGCTACCTGCTGGCGGCCGGACAGGGTGGCGTCCAC
CCACGGGGCCGGGAGACGTTCGGCCATTCGGCCATCGTCGATCCCTGGGGCCGGGTCCTGGCCGAGCGGCCG
CAGGGCGAAGCGGTGCTGCTGGCGGCGCGCGACGCCGCAGAACAGGCGGATATCCGCCGGCGCATGCCGGTG
GTGGCGCACAGACGATTTTTCCCGCCGGCCGAACCGCGGCCGGCGCGTACGGAGTGA
Translation:
MSIAVIQMVSQDDVTANLAAARRLLEQAAEGGARLAVLPENFAAMGRRDLAELGRAEARGNGPILSWLNSAA
RDLRLWIVAGTLPLPPDGQPEAKANACSLLIDEHGERVARYDKLHLFDVDVADARGRYRESDDYAFGQKIVV
ADTPVGRLGLTVCYDLRFPELYTALREAGAELITAPSAFTAVTGAAHWQVLVRARAIETQCYLLAAGQGGVH
PRGRETFGHSAIVDPWGRVLAERPQGEAVLLAARDAAEQADIRRRMPVVAHRRFFPPAEPRPARTE*
AnnotationID:2795GeneID:2787
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 09:09:06
Gene Name:
Confidence Code:3
GeneProduct:putative carbon-nitrogen hydrolase
Cell Localization:()
Synonyms:PA4475
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0807,COG0388,KOG0806
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57915.1| (AE016872) hydrolase, carbon-nitrogen family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 281

 Score =  456 bits (1173), Expect = e-128
 Identities = 223/279 (79%), Positives = 246/279 (88%)

>gb|AAN66564.1|AE016285_2 (AE016777) carbon-nitrogen hydrolase family protein [Pseudomonas
           putida KT2440]
          Length = 283

 Score =  443 bits (1139), Expect = e-124
 Identities = 223/281 (79%), Positives = 239/281 (85%)

>gb|AAM83788.1|AE013619_9 (AE013619) putative carbon-nitrogen hydrolase [Yersinia pestis KIM]
          Length = 289

 Score =  234 bits (597), Expect = 4e-61
 Identities = 121/275 (44%), Positives = 169/275 (61%), Gaps = 3/275 (1%)







 
Structural Features:
KOG0807, Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
CD-Length = 295 residues,  90.5% aligned
Score =  257 bits (659), Expect = 2e-69
Identities = 118/270 (43%), Positives = 159/270 (58%), Gaps = 6/270 (2%)

COG0388, Predicted amidohydrolase 
CD-Length = 274 residues,  96.4% aligned
Score =  190 bits (483), Expect = 3e-49
Identities = 117/277 (42%), Positives = 147/277 (53%), Gaps = 18/277 (6%)

KOG0806, Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
CD-Length = 298 residues,  92.3% aligned
Score =  137 bits (347), Expect = 2e-33
Identities = 81/285 (28%), Positives = 134/285 (47%), Gaps = 25/285 (8%)










   
Genomic Context:






   
Comment:


















    ReferenceID:5577




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31513




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2787_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2787
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4530
                           PA4475_tr
                           translation of PA4475
                           282
                           99.29
                           99.29
                           0
                           1437.0
     

     
     
130431
                           gb|AAG07863.1|AE004861_4
                           (AE004861) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           282
                           99.29
                           99.29
                           0
                           1437.0
     

     
     
130432
                           gb|AAO57915.1|
                           (AE016872) hydrolase, carbon-nitrogen family [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           79.07
                           87.23
                           1
                           1171.0
     

     
     
130433
                           gb|AAN66564.1|AE016285_2
                           (AE016777) carbon-nitrogen hydrolase family protein [Pseudomonas putida KT2440]
                           283
                           78.79
                           84.45
                           1
                           1139.0
     

     
     
130435
                           gb|AAO09895.1|AE016801_214
                           (AE016801) Predicted amidohydrolase [Vibrio vulnificus CMCP6]
                           284
                           46.12
                           62.32
                           12
                           647.0
     

     






      

          
GC ORFID: 45789How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4475Glimmer Score: 

          
Start: 4432018Stop: 4431170

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4475 translation of PA4475Homolog Bit Score 558.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5511 (ORF: BLASTX 464.0), t_PA4475 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATTGCCGTGATCCAGATGGTCAGCCAGGACGACGTGACGGCCAACCTGGCCGCCGCCCGTCGCCTG 
CTGGAACAGGCCGCCGAGGGTGGGGCGCGGCTCGCCGTGTTGCCGGAAAACTTCGCCGCCATGGGCCGGCGC 
GACCTGGCCGAACTGGGGCGCGCCGAGGCGCGGGGGAACGGGCCGATCCTGTCGTGGTTGAATTCTGCCGCT 
CGCGACCTCAGGTTGTGGATAGTCGCTGGAACGCTGCCGCTGCCGCCGGATGGGCAACCCGAGGCGAAGGCG 
AATGCCTGTTCGCTGCTGATTGACGAGCACGGAGAGCGGGTCGCCCGCTACGACAAGCTGCACCTGTTCGAT 
GTGGACGTAGCCGATGCGCGGGGCCGCTATCGTGAATCCGACGACTATGCTTTCGGTCAGAAGATCGTGGTG 
GCGGATACGCCGGTCGGTCGCCTTGGCCTGACGGTCTGCTACGACCTGCGTTTTCCGGAACTCTATACCGCG 
CTGCGCGAGGCCGGCGCAGAGCTGATCACGGCGCCGTCGGCGTTCACCGCGGTGACCGGCGCGGCGCACTGG 
CAAGTGCTGGTCCGCGCCCGTGCCATCGAGACCCAGTGCTACCTGCTGGCGGCCGGACAGGGTGGCGTCCAC 
CCACGGGGCCGGGAGACGTTCGGCCATTCGGCCATCGTCGATCCCTGGGGCCGGGTCCTGGCCGAGCGGCCG 
CAGGGCGAAGCGGTGCTGCTGGCGGCGCGCGACGCCGCAGAACAGGCGGATATCCGCCGGCGCATGCCGGTG 
GTGGCGCACAGACGATTTTTCCCGCCGGCCGAACCGCGGCCGGCGCGTACGGAGTGA