ViewGene
Locus Name:
GeneID:
Location:

GeneID:2786
TrivialName: PA14_23000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23000
PAO1 Ortholog Locus:PA3188
Sequence Length:846
Protein Length:281
Start: 1994594
Stop: 1995439
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06576.1|AE004742_12 (AE004742) probable permease of ABC sugar transporter [Pseudomonas aeruginosa PAO1]
Identities = 280/281 (99%), Positives = 280/281 (99%)
Sequence:
ATGCGTGACACGTCCCTGAACCCGAGCTTCAGCGTCAGCCGCCTGGCCGTGCACCTGACCCTCTGGGGCGCC
TGCGCGCTTTACCTGGTGCCGCTGCTGGTGATGCTGCTGACCAGCTTCAAGACGCCGGACGACATCCGCACC
GGCAACCTGCTGTCGCTGCCCGACACCTTCACCGTCATCGGCTGGCTCAAGGCCTGGGACAGCGTCGGCGCG
TTCTTCTGGAACTCGGTGCTGATCACCGTGCCCGGCGTGCTGATCTCCACCTTCATCGGCGCGTTGAACGGC
TACGTGCTGTCGATGTGGCGCTTCCGCGGTTCCCAGCTGTTCTTCGGCGCGCTGTTGTTCGGCTGCTTTCTA
CCGTTCCAGGTGATCCTCCTGCCGATGTCCTTCACCCTCGGCAAGCTCGGCCTGGCCAATACCACCAGTGGC
CTGGTGCTGGTCCACGTGATCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTATTTCGTGGCGATC
CCGGATGCCCTGGTCAAGGCCGCGCGCCTGGACGGCGCCGGTTTCTTCACCATCTTCCTGCGCATCCTGCTG
CCGATGTCCACGCCCATCGTGATGGTCTGCCTGATCTGGCAGTTCACCCAGATCTGGAACGACTTCCTGTTC
GGCGTGGTGTTCGCCAGCGGCGATTCGCAACCGATCACCGTGGCCCTGAACAACCTGGTGAACATCACCACC
GGGGTCAAGGAATACAACGTCGACATGGCCGCGGCGATGATCGCCGCGCTGCCCACGCTGGTGGTCTACGTA
CTGGCCGGCAAGTACTTCGTGCGCGGCCTCACCGCCGGCGCCGTGAAAGGCTGA
Translation:
MRDTSLNPSFSVSRLAVHLTLWGACALYLVPLLVMLLTSFKTPDDIRTGNLLSLPDTFTVIGWLKAWDSVGA
FFWNSVLITVPGVLISTFIGALNGYVLSMWRFRGSQLFFGALLFGCFLPFQVILLPMSFTLGKLGLANTTSG
LVLVHVIYGLAFTTLFFRNYFVAIPDALVKAARLDGAGFFTIFLRILLPMSTPIVMVCLIWQFTQIWNDFLF
GVVFASGDSQPITVALNNLVNITTGVKEYNVDMAAAMIAALPTLVVYVLAGKYFVRGLTAGAVKG*
AnnotationID:2794GeneID:2786
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:34
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC sugar transporter
Cell Localization:()
Synonyms:PA3188, gltG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0395,COG3833
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66642.1|AE016292_2 (AE016777) sugar ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 281

 Score =  460 bits (1183), Expect = e-129
 Identities = 225/274 (82%), Positives = 247/274 (90%)

>gb|AAO08576.1|AE016797_31 (AE016797) ABC-type sugar transport system, permease component
           [Vibrio vulnificus CMCP6]
          Length = 285

 Score =  391 bits (1004), Expect = e-108
 Identities = 188/285 (65%), Positives = 232/285 (81%), Gaps = 9/285 (3%)

>dbj|BAB50035.1| (AP003001) permease of ABC sugar transporter [Mesorhizobium loti]
          Length = 314

 Score =  330 bits (845), Expect = 7e-90
 Identities = 169/298 (56%), Positives = 215/298 (72%), Gaps = 29/298 (9%)






 
Structural Features:
COG0395, UgpE, ABC-type sugar transport system, permease component 
[Carbohydrate transport and metabolism]
CD-Length = 281 residues,  98.2% aligned
Score =  210 bits (536), Expect = 1e-55
Identities = 101/276 (36%), Positives = 157/276 (56%), Gaps = 4/276 (1%)

COG3833, MalG, ABC-type maltose transport systems, permease component 
[Carbohydrate transport and metabolism]
CD-Length = 282 residues,  95.4% aligned
Score =  136 bits (344), Expect = 3e-33
Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 4/270 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5575




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22719




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32355




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2786_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2786
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4529
                           PA3188_tr
                           translation of PA3188
                           281
                           99.64
                           99.64
                           0
                           1438.0
     

     
     
130415
                           gb|AAG06576.1|AE004742_12
                           (AE004742) probable permease of ABC sugar transporter [Pseudomonas aeruginosa PAO1]
                           281
                           99.64
                           99.64
                           0
                           1438.0
     

     
     
130416
                           gb|AAN66642.1|AE016292_2
                           (AE016777) sugar ABC transporter, permease protein [Pseudomonas putida KT2440]
                           281
                           80.42
                           88.25
                           0
                           1181.0
     

     
     
130417
                           gb|AAO54818.1|
                           (AE016860) glucose ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           281
                           79.00
                           86.83
                           0
                           1167.0
     

     
     
130418
                           gb|AAO08576.1|AE016797_31
                           (AE016797) ABC-type sugar transport system, permease component [Vibrio vulnificus CMCP6]
                           290
                           64.82
                           80.00
                           14
                           1010.0
     

     






      

          
GC ORFID: 45788How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3188Glimmer Score: 

          
Start: 2959337Stop: 2958492

          
Length: 846


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3188 translation of PA3188Homolog Bit Score 558.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4420 (ORF: BLASTX 456.0), t_PA3188 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGACACGTCCCTGAACCCGAGCTTCAGCGTCAGCCGCCTGGCCGTGCACCTGACCCTCTGGGGCGCC 
TGCGCGCTTTACCTGGTGCCGCTGCTGGTGATGCTGCTGACCAGCTTCAAGACGCCGGACGACATCCGCACC 
GGCAACCTGCTGTCGCTGCCCGACACCTTCACCGTCATCGGCTGGCTCAAGGCCTGGGACAGCGTCGGCGCG 
TTCTTCTGGAACTCGGTGCTGATCACCGTGCCCGGCGTGCTGATCTCCACCTTCATCGGCGCGTTGAACGGC 
TACGTGCTGTCGATGTGGCGCTTCCGCGGTTCCCAGCTGTTCTTCGGCGCGCTGTTGTTCGGCTGCTTTCTA 
CCGTTCCAGGTGATCCTCCTGCCGATGTCCTTCACCCTCGGCAAGCTCGGCCTGGCCAATACCACCAGTGGC 
CTGGTGCTGGTCCACGTGATCTACGGCCTGGCCTTCACCACGCTGTTCTTCCGCAACTATTTCGTGGCGATC 
CCGGATGCCCTGGTCAAGGCCGCGCGCCTGGACGGCGCCGGTTTCTTCACCATCTTCCTGCGCATCCTGCTG 
CCGATGTCCACGCCCATCGTGATGGTCTGCCTGATCTGGCAGTTCACCCAGATCTGGAACGACTTCCTGTTC 
GGCGTGGTGTTCGCCAGCGGCGATTCGCAACCGATCACCGTGGCCCTGAACAACCTGGTGAACATCACCACC 
GGGGTCAAGGAATACAACGTCGACATGGCCGCGGCGATGATCGCCGCGCTGCCCACGCTGGTGGTCTACGTA 
CTGGCCGGCAAGTACTTCGTGCGCGGCCTCACCGCCGGCGCCGTGAAAGGCTGA