ViewGene
Locus Name:
GeneID:
Location:

GeneID:2785
TrivialName: PA14_31370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31370
PAO1 Ortholog Locus:PA2564
Sequence Length:828
Protein Length:275
Start: 2727476
Stop: 2728303
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05952.1|AE004684_7 (AE004684) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/275 (98%), Positives = 273/275 (99%)
Sequence:
ATGGTGCATGACCTTCTCCGAGATCGTGCGGATCTAGAGGCGCGTTGGAACCCTTCCGCCTACATGCAGTTC
GCCCGATTGCGCCAGCGGCCGGTGGTCGAGTTGCTGGACAATATCGAGCTGTGCTGTCCGGAACGGATCTAC
GATCTTGGCTGCGGAACCGGCATCGCCACCGAATTGCTCGCCCGCCGCTGGCCGCTGGCCGAACTGCACGGC
GTGGACAGCTCCGTGGAGATGCTCGAGGAGGCCGCGCGCTTGCCGATCAAGGCCAGTTGGGAACGCGCCAAC
CTGCGCCACTGGTGCGCCGAGCGCCCTGCCAGCCTGCTGTTCGCAGCGGCGGTACTGCACTTTCTCGAAGAT
CACGGCAAGCTGCTGCCACGCCTGCTGGGGCAACTGGCTCCGGGAGGCTGCCTGGCGGCGCACATGCCGAAC
TGGCGCGATGCTTCCTGGTATCGCCTGATGCTCGATGCGCTGGACAGTGCGGGCCCCGGCGGTGCATCGCTG
GGCAGCCCCGCGTTGCGCTACCGGCTGCATCGGCGCAATGTGCTGTCGCTGGACAACTACTACCGGCTACTG
GCACCGCTGACGGCGGAGCTGGACATCTGGGAGACCGAGTACCTGCAAGTGGTGGACGGCAACGACCCGATC
TTCGATTGGATCAAGGTCTCCGCCTTGCGTCCGGTGCTCGGCGAACTGGACGAGGAGGCGCGTCGGCGCTTC
CTCGACCGTTACCTGGAACTGCTGCACCGTCACTATCCACGGGAACTGGATGGACGAACGCTGTTCCCGTTC
CGCCGAGTATTCATCGTCGCCAGTCTCGGCCGTTGA
Translation:
MVHDLLRDRADLEARWNPSAYMQFARLRQRPVVELLDNIELCCPERIYDLGCGTGIATELLARRWPLAELHG
VDSSVEMLEEAARLPIKASWERANLRHWCAERPASLLFAAAVLHFLEDHGKLLPRLLGQLAPGGCLAAHMPN
WRDASWYRLMLDALDSAGPGGASLGSPALRYRLHRRNVLSLDNYYRLLAPLTAELDIWETEYLQVVDGNDPI
FDWIKVSALRPVLGELDEEARRRFLDRYLELLHRHYPRELDGRTLFPFRRVFIVASLGR*
AnnotationID:2793GeneID:2785
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:16
Gene Name:
Confidence Code:3
GeneProduct:putative trans-aconitate methyltransferase
Cell Localization:()
Synonyms:tam
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4106
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4106, Tam, Trans-aconitate methyltransferase
CD-Length = 257 residues, 100.0% aligned
Score =  339 bits (871), Expect = 2e-94
Identities = 131/262 (50%), Positives = 158/262 (60%), Gaps = 5/262 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5573




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33128




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2785_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2785
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4528
                           PA2564_tr
                           translation of PA2564
                           275
                           98.54
                           99.27
                           0
                           1437.0
     

     
     
130412
                           gb|AAG05952.1|AE004684_7
                           (AE004684) hypothetical protein PA2564 [Pseudomonas aeruginosa PAO1]
                           275
                           98.54
                           99.27
                           0
                           1437.0
     

     
     
130413
                           gb|AAM85247.1|AE013771_2
                           (AE013771) putative enzyme [Yersinia pestis KIM]
                           276
                           39.13
                           52.89
                           19
                           464.0
     

     
     
130414
                           emb|CAC91314.1|
                           (AJ414152) puative trans-aconitate methyltransferase [Yersinia pestis CO92]
                           276
                           39.13
                           52.89
                           19
                           464.0
     

     






      

          
GC ORFID: 45787How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2564Glimmer Score: 

          
Start: 2226450Stop: 2225623

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2564 translation of PA2564Homolog Bit Score 558.0

          
Other Homologs:  t_PA2564 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGCATGACCTTCTCCGAGATCGTGCGGATCTAGAGGCGCGTTGGAACCCTTCCGCCTACATGCAGTTC 
GCCCGATTGCGCCAGCGGCCGGTGGTCGAGTTGCTGGACAATATCGAGCTGTGCTGTCCGGAACGGATCTAC 
GATCTTGGCTGCGGAACCGGCATCGCCACCGAATTGCTCGCCCGCCGCTGGCCGCTGGCCGAACTGCACGGC 
GTGGACAGCTCCGTGGAGATGCTCGAGGAGGCCGCGCGCTTGCCGATCAAGGCCAGTTGGGAACGCGCCAAC 
CTGCGCCACTGGTGCGCCGAGCGCCCTGCCAGCCTGCTGTTCGCAGCGGCGGTACTGCACTTTCTCGAAGAT 
CACGGCAAGCTGCTGCCACGCCTGCTGGGGCAACTGGCTCCGGGAGGCTGCCTGGCGGCGCACATGCCGAAC 
TGGCGCGATGCTTCCTGGTATCGCCTGATGCTCGATGCGCTGGACAGTGCGGGCCCCGGCGGTGCATCGCTG 
GGCAGCCCCGCGTTGCGCTACCGGCTGCATCGGCGCAATGTGCTGTCGCTGGACAACTACTACCGGCTACTG 
GCACCGCTGACGGCGGAGCTGGACATCTGGGAGACCGAGTACCTGCAAGTGGTGGACGGCAACGACCCGATC 
TTCGATTGGATCAAGGTCTCCGCCTTGCGTCCGGTGCTCGGCGAACTGGACGAGGAGGCGCGTCGGCGCTTC 
CTCGACCGTTACCTGGAACTGCTGCACCGTCACTATCCACGGGAACTGGATGGACGAACGCTGTTCCCGTTC 
CGCCGAGTATTCATCGTCGCCAGTCTCGGCCGTTGA