ViewGene
Locus Name:
GeneID:
Location:

GeneID:2784
TrivialName: PA14_37510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37510
PAO1 Ortholog Locus:PA2088
Sequence Length:849
Protein Length:282
Start: 3339314
Stop: 3338466
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05476.1|AE004636_7 (AE004636) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 280/282 (99%), Positives = 280/282 (99%)
Sequence:
ATGAACGCGATCATTGAACAGGCGCGCAGCCTGGACGGCTACCAGGATTCCAGCGAACTGCTGCAACGTCGC
GACCAGGACTGGGTGCTCGACCGCGCCGGCATCGAGCCGCGCAGCCTGCTCGATCTCGGCTGCGGCATCGGC
TCGCTGCTGCTCGGCGCCGCCCGGCGCTGGCCCGGCCTGCAACGGTTGTGGGGCATCGAGCGTTCGCCGCTG
CGCCTGGAGCAGGCGCGCGCGCAGTTGCGCGGGGCTGGCGTCGAGGCGCGTCTGCTGGAGGGCGACCTGCTC
GACCTGCCGCCGCTGGCGGAACGCTTCGAGCTGATCAGCATGACCGCCGTGCTGCACTGGCTGTATCCCGAC
GAAGAGCGGCTGTTCCGGTGGGTCGCGCGGCACCTCGAGGCGCAGGGGGTATTCCTGTTCACCTCGCACCAT
CCGTTCGCCGAGGATGGCCTCGGCGGCGAGGACGACCTGGTCGCCCAGGCCCTGGTCGAGATGGGCCTGGCC
GCGCCGGAGCGGGTGGCGGCGCTCTACGCGGAAGCCGGGCTGCTGCCGATGGGCACCCGCACCCGTGGCCGG
GAGGCGTTGCGCGAACGCGTCGAACGGCACTTCCGGGTCGACTCCATCGTCTCCCGCCCGGCGGCCCTGCGC
GTCGCCGACTCCGCCGAGTACCAGCGTTTCCACGCCGCCACCTTCGGCACCTATTTCGCACCGCTGGTGCCG
GCGACGCGCCTGGAGGAATTCTTCGTCCGCCTCGGGCGGATCGCCGAGCGGCGCATGCAGGCCGACGGACAG
GTCAGCGAAATCCCGGTCAGCGTCTGGCGCTGCCGGGCGCGGGAGGGCGAGGCATAA
Translation:
MNAIIEQARSLDGYQDSSELLQRRDQDWVLDRAGIEPRSLLDLGCGIGSLLLGAARRWPGLQRLWGIERSPL
RLEQARAQLRGAGVEARLLEGDLLDLPPLAERFELISMTAVLHWLYPDEERLFRWVARHLEAQGVFLFTSHH
PFAEDGLGGEDDLVAQALVEMGLAAPERVAALYAEAGLLPMGTRTRGREALRERVERHFRVDSIVSRPAALR
VADSAEYQRFHAATFGTYFAPLVPATRLEEFFVRLGRIAERRMQADGQVSEIPVSVWRCRAREGEA*
AnnotationID:2792GeneID:2784
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:45
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2088
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22715




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32619




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2784_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2784
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4527
                           PA2088_tr
                           translation of PA2088
                           282
                           99.29
                           99.29
                           0
                           1437.0
     

     
     
130411
                           gb|AAG05476.1|AE004636_7
                           (AE004636) hypothetical protein PA2088 [Pseudomonas aeruginosa PAO1]
                           282
                           99.29
                           99.29
                           0
                           1437.0
     

     






      

          
GC ORFID: 45786How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2088Glimmer Score: 

          
Start: 1614600Stop: 1615448

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2088 translation of PA2088Homolog Bit Score 558.0

          
Other Homologs:  t_PA2088 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCGATCATTGAACAGGCGCGCAGCCTGGACGGCTACCAGGATTCCAGCGAACTGCTGCAACGTCGC 
GACCAGGACTGGGTGCTCGACCGCGCCGGCATCGAGCCGCGCAGCCTGCTCGATCTCGGCTGCGGCATCGGC 
TCGCTGCTGCTCGGCGCCGCCCGGCGCTGGCCCGGCCTGCAACGGTTGTGGGGCATCGAGCGTTCGCCGCTG 
CGCCTGGAGCAGGCGCGCGCGCAGTTGCGCGGGGCTGGCGTCGAGGCGCGTCTGCTGGAGGGCGACCTGCTC 
GACCTGCCGCCGCTGGCGGAACGCTTCGAGCTGATCAGCATGACCGCCGTGCTGCACTGGCTGTATCCCGAC 
GAAGAGCGGCTGTTCCGGTGGGTCGCGCGGCACCTCGAGGCGCAGGGGGTATTCCTGTTCACCTCGCACCAT 
CCGTTCGCCGAGGATGGCCTCGGCGGCGAGGACGACCTGGTCGCCCAGGCCCTGGTCGAGATGGGCCTGGCC 
GCGCCGGAGCGGGTGGCGGCGCTCTACGCGGAAGCCGGGCTGCTGCCGATGGGCACCCGCACCCGTGGCCGG 
GAGGCGTTGCGCGAACGCGTCGAACGGCACTTCCGGGTCGACTCCATCGTCTCCCGCCCGGCGGCCCTGCGC 
GTCGCCGACTCCGCCGAGTACCAGCGTTTCCACGCCGCCACCTTCGGCACCTATTTCGCACCGCTGGTGCCG 
GCGACGCGCCTGGAGGAATTCTTCGTCCGCCTCGGGCGGATCGCCGAGCGGCGCATGCAGGCCGACGGACAG 
GTCAGCGAAATCCCGGTCAGCGTCTGGCGCTGCCGGGCGCGGGAGGGCGAGGCATAA