ViewGene
Locus Name:
GeneID:
Location:

GeneID:2783
TrivialName: PA14_42380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42380
PAO1 Ortholog Locus:PA1714
Sequence Length:831
Protein Length:276
Start: 3776592
Stop: 3775762
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAC44772.1| (U56077) ExsD [Pseudomonas aeruginosa]
Identities = 275/276 (99%), Positives = 276/276 (100%)
Sequence:
ATGGAGCAGGAAGACGATAAGCAGTACTCCCGAGAAGCGGTGTTCGCCGGCAGGCGGGTATCCGTGGTGGGC
TCGGACGCCCGCTCGCGGGGTCGGGTGCCGGGTTACGCATCGAGCAGTTTGTATCGTGAGTCCGGAATCATC
AGTGCGCGGCAACTGGCGTTGCTGCAGCGGATGCTGCCGCGCCTGCGGCTGGAGCAACTGTTCCGCTGCGAA
TGGTTGCAGCAGCGCCTGGCGCGCGGCCTGGCACTGGGGCGCGAAGAGGTGCGGCAGATTCTCCTCTGCGCG
GCGCAGGACGACGACGGCTGGTGCGCCGAACTGGGCGATCGGGTCAACCTCGCCGTGCCGCAGTCGATGATC
GATTGGGTCCTGCTGCCGGTCTATGGCTGGTGGGAAAGCCTGCTCGACCAGGCGATCCCCGGCTGGCGCCTG
TCGCTGGTGGAGCTGGAGACCCAGTCCCGGCAACTGCGAATCAAGTCCGAATTCTGGTCCCGCGTGGCCGAG
CTGGAGCCGGAGCAGGCCCGCGAGGAACTGGCCAGGGTCGCCAAGTGCCAGGCGCGCACCCAGGAACAGGTG
GCCGAACTGGCCGGCAAGCTGGAGACGGCTTCGGCATTGGCGAAGAGCGCCTGGCCGAACTGGCAGCGGGGA
ATGGCGACGCTGCTCGCCAGCGGCGGGCTGGCCGGCTTCGAGCCGATCCCCGAGGTCCTCGAATGCCTCTGG
CAACCTCTCTGCCGGCTGGACGACGACGTCGGCGCGGCGGACGCCGTCCAGGCCTGGCTGCACGAACGCAAC
CTGTGCCAGGCACAGGATCACTTCTACTGGCAGAGCTGA
Translation:
MEQEDDKQYSREAVFAGRRVSVVGSDARSRGRVPGYASSSLYRESGIISARQLALLQRMLPRLRLEQLFRCE
WLQQRLARGLALGREEVRQILLCAAQDDDGWCAELGDRVNLAVPQSMIDWVLLPVYGWWESLLDQAIPGWRL
SLVELETQSRQLRIKSEFWSRVAELEPEQAREELARVAKCQARTQEQVAELAGKLETASALAKSAWPNWQRG
MATLLASGGLAGFEPIPEVLECLWQPLCRLDDDVGAADAVQAWLHERNLCQAQDHFYWQS*
AnnotationID:2791GeneID:2783
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:09
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:exsD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:5569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22713




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2783
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
130409
                           gb|AAC44772.1|
                           (U56077) ExsD [Pseudomonas aeruginosa]
                           276
                           99.63
                           99.99
                           0
                           1441.0
     

     
     
4526
                           PA1714_tr
                           translation of PA1714
                           276
                           99.27
                           99.99
                           0
                           1438.0
     

     
     
130410
                           gb|AAG05103.1|AE004598_2
                           (AE004598) hypothetical protein PA1714 [Pseudomonas aeruginosa PAO1]
                           276
                           99.27
                           99.99
                           0
                           1438.0
     

     






      

          
GC ORFID: 45785How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1714Glimmer Score: 

          
Start: 1177317Stop: 1178147

          
Length: 831


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1714 translation of PA1714Homolog Bit Score 558.0

          
Other Homologs:  t_PA1714 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCAGGAAGACGATAAGCAGTACTCCCGAGAAGCGGTGTTCGCCGGCAGGCGGGTATCCGTGGTGGGC 
TCGGACGCCCGCTCGCGGGGTCGGGTGCCGGGTTACGCATCGAGCAGTTTGTATCGTGAGTCCGGAATCATC 
AGTGCGCGGCAACTGGCGTTGCTGCAGCGGATGCTGCCGCGCCTGCGGCTGGAGCAACTGTTCCGCTGCGAA 
TGGTTGCAGCAGCGCCTGGCGCGCGGCCTGGCACTGGGGCGCGAAGAGGTGCGGCAGATTCTCCTCTGCGCG 
GCGCAGGACGACGACGGCTGGTGCGCCGAACTGGGCGATCGGGTCAACCTCGCCGTGCCGCAGTCGATGATC 
GATTGGGTCCTGCTGCCGGTCTATGGCTGGTGGGAAAGCCTGCTCGACCAGGCGATCCCCGGCTGGCGCCTG 
TCGCTGGTGGAGCTGGAGACCCAGTCCCGGCAACTGCGAATCAAGTCCGAATTCTGGTCCCGCGTGGCCGAG 
CTGGAGCCGGAGCAGGCCCGCGAGGAACTGGCCAGGGTCGCCAAGTGCCAGGCGCGCACCCAGGAACAGGTG 
GCCGAACTGGCCGGCAAGCTGGAGACGGCTTCGGCATTGGCGAAGAGCGCCTGGCCGAACTGGCAGCGGGGA 
ATGGCGACGCTGCTCGCCAGCGGCGGGCTGGCCGGCTTCGAGCCGATCCCCGAGGTCCTCGAATGCCTCTGG 
CAACCTCTCTGCCGGCTGGACGACGACGTCGGCGCGGCGGACGCCGTCCAGGCCTGGCTGCACGAACGCAAC 
CTGTGCCAGGCACAGGATCACTTCTACTGGCAGAGCTGA