ViewGene
Locus Name:
GeneID:
Location:

GeneID:2782
TrivialName: PA14_04460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04460
PAO1 Ortholog Locus:PA0341
Sequence Length:801
Protein Length:266
Start: 397899
Stop: 398699
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03730.1|AE004472_2 (AE004472) prolipoprotein diacylglyceryl transferase [Pseudomonas aeruginosa PAO1]
Identities = 265/266 (99%), Positives = 266/266 (100%)
Sequence:
ATGCTGACGTATCCCCAGATCGATCCGGTTGCGCTGGCCGTCGGCCCGCTGAAGATCCACTGGTACGGGCTG
ATGTACCTGATCGGGATCGGCGGCGCCTGGCTGCTGGCGTCGCGCCGGATGAAGCGCTTCGACCCGACCTGG
ACCAAGGAGCGCCTTTCCGACCTGGTCTTCTGGGTCGCCTGCGGCGTGATCCTCGGTGGCCGCCTGGGCTAC
GTGCTGTTCTACAACCTGGACGAGTACATCGCCAACCCGACGCTGATCTTCGAGGTCTGGAAAGGCGGCATG
TCCTTCCATGGCGGTCTGCTCGGCGTGATGCTGGCGGTCTGGTGGTTCGGCAAGCGCCATGGCAAGAGCTTC
TTCCAGCTGATGGACTTCATCGCCCCGCTGGTGCCCATCGGCCTGGGCGCCGGGCGCATCGGCAACTTCATC
AACTCGGAACTGTGGGGCAAGGTCAGCGACGTGCCCTGGGCCATGGTCTTCCCCAACGGAGGCCCGCTGCCG
CGGCATCCCTCGCAGCTGTACCAGTTCGCCCTGGAAGGCGTGGCGCTGTTCGTCATCCTCTGGCTGTTCACC
CGCAAGCCACGGCCGACCGCCTCGGTCTCCGGCCTGTTCGTGCTGTGCTACGGGATCTTCCGCTTCGTCGTC
GAGTTCGTCCGCGTGCCGGATGCCCAGCTCGGCTACCTCGCCTGGGGTTGGCTGACCATGGGCCAGGTGCTC
TGCGTACCGATGGTGCTGGCCGGCATTGCCCTGATGGTCTGGGCCTACCGCCGCGACGCGGCGCAGCCGAAG
GCGGCCTGA
Translation:
MLTYPQIDPVALAVGPLKIHWYGLMYLIGIGGAWLLASRRMKRFDPTWTKERLSDLVFWVACGVILGGRLGY
VLFYNLDEYIANPTLIFEVWKGGMSFHGGLLGVMLAVWWFGKRHGKSFFQLMDFIAPLVPIGLGAGRIGNFI
NSELWGKVSDVPWAMVFPNGGPLPRHPSQLYQFALEGVALFVILWLFTRKPRPTASVSGLFVLCYGIFRFVV
EFVRVPDAQLGYLAWGWLTMGQVLCVPMVLAGIALMVWAYRRDAAQPKAA*
AnnotationID:2790GeneID:2782
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 17:05:27
Gene Name:lgt
Confidence Code:2
GeneProduct:prolipoprotein diacylglyceryl transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01790
Secondary Functional Category(ies):
EC Number:2.4.99.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70707.1|AE016714_5 (AE016793) prolipoprotein diacylglyceryl transferase [Pseudomonas
           putida KT2440]
          Length = 268

 Score =  455 bits (1170), Expect = e-127
 Identities = 210/267 (78%), Positives = 240/267 (89%), Gaps = 4/267 (1%)

>gb|AAO58709.1| (AE016875) prolipoprotein diacylglyceryl transferase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 270

 Score =  453 bits (1165), Expect = e-127
 Identities = 210/269 (78%), Positives = 241/269 (89%), Gaps = 3/269 (1%)

>emb|CAA07072.1| (AJ006514) prolipoprotein diacylglyceryl transferase [Vibrio
           cholerae]
          Length = 271

 Score =  347 bits (891), Expect = 3e-95
 Identities = 161/265 (60%), Positives = 208/265 (78%), Gaps = 1/265 (0%)






 
Structural Features:
pfam01790, LGT, Prolipoprotein diacylglyceryl transferase.
CD-Length = 258 residues, 100.0% aligned
Score =  273 bits (699), Expect = 2e-74
Identities = 129/264 (48%), Positives = 173/264 (65%), Gaps = 17/264 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5567




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33682




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2782_cdd.html


    		




 
URL:

















    ReferenceID:35418




  
Author/Investigator(s):
        Gan K, Sankaran K, Williams MG, Aldea M, Rudd KE, Kushner SR, Wu HC.





  
Title:
        The umpA gene of Escherichia coli encodes phosphatidylglycerol:prolipoprotein diacylglyceryl transferase (lgt) and regulates thymidylate synthase levels through translational coupling.




  
PubMed:
        7896715


MedLine:
        




    
Source:
J Bacteriol. 1995 Apr;177(7):1879-82.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7896715









           
Homologs By Global Alignment 

           

       



     
Gene ID:2782
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4525
                           PA0341_tr
                           translation of PA0341
                           266
                           99.62
                           99.99
                           0
                           1441.0
     

     
     
130349
                           gb|AAG03730.1|AE004472_2
                           (AE004472) prolipoprotein diacylglyceryl transferase [Pseudomonas aeruginosa PAO1]
                           266
                           99.62
                           99.99
                           0
                           1441.0
     

     
     
130350
                           gb|AAN70707.1|AE016714_5
                           (AE016793) prolipoprotein diacylglyceryl transferase [Pseudomonas putida KT2440]
                           270
                           77.77
                           88.88
                           6
                           1174.0
     

     
     
130351
                           gb|AAO58709.1|
                           (AE016875) prolipoprotein diacylglyceryl transferase [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           77.77
                           89.25
                           4
                           1168.0
     

     
     
130354
                           dbj|BAC93442.1|
                           (AP005332) prolipoprotein diacylglyceryltransferase [Vibrio vulnificus YJ016]
                           272
                           59.19
                           75.00
                           7
                           888.0
     

     






      

          
GC ORFID: 45784How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0341Glimmer Score: 

          
Start: 6199241Stop: 6200041

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0341 translation of PA0341Homolog Bit Score 559.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6533 (ORF: BLASTX 452.0), t_PA0341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACGTATCCCCAGATCGATCCGGTTGCGCTGGCCGTCGGCCCGCTGAAGATCCACTGGTACGGGCTG 
ATGTACCTGATCGGGATCGGCGGCGCCTGGCTGCTGGCGTCGCGCCGGATGAAGCGCTTCGACCCGACCTGG 
ACCAAGGAGCGCCTTTCCGACCTGGTCTTCTGGGTCGCCTGCGGCGTGATCCTCGGTGGCCGCCTGGGCTAC 
GTGCTGTTCTACAACCTGGACGAGTACATCGCCAACCCGACGCTGATCTTCGAGGTCTGGAAAGGCGGCATG 
TCCTTCCATGGCGGTCTGCTCGGCGTGATGCTGGCGGTCTGGTGGTTCGGCAAGCGCCATGGCAAGAGCTTC 
TTCCAGCTGATGGACTTCATCGCCCCGCTGGTGCCCATCGGCCTGGGCGCCGGGCGCATCGGCAACTTCATC 
AACTCGGAACTGTGGGGCAAGGTCAGCGACGTGCCCTGGGCCATGGTCTTCCCCAACGGAGGCCCGCTGCCG 
CGGCATCCCTCGCAGCTGTACCAGTTCGCCCTGGAAGGCGTGGCGCTGTTCGTCATCCTCTGGCTGTTCACC 
CGCAAGCCACGGCCGACCGCCTCGGTCTCCGGCCTGTTCGTGCTGTGCTACGGGATCTTCCGCTTCGTCGTC 
GAGTTCGTCCGCGTGCCGGATGCCCAGCTCGGCTACCTCGCCTGGGGTTGGCTGACCATGGGCCAGGTGCTC 
TGCGTACCGATGGTGCTGGCCGGCATTGCCCTGATGGTCTGGGCCTACCGCCGCGACGCGGCGCAGCCGAAG 
GCGGCCTGA