ViewGene
Locus Name:
GeneID:
Location:

GeneID:278
TrivialName: PA14_63960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63960
PAO1 Ortholog Locus:PA4837
Sequence Length:2127
Protein Length:708
Start: 5700483
Stop: 5698357
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08222.1|AE004896_12 (AE004896) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 701/708 (99%), Positives = 705/708 (99%)
Sequence:
ATGAGAGTCAGTGTGTCGCTTGTCCTCGGTGTCGGCCTCGGTTGCAGCAGTCCGGCGCTCTGGGCGGAAACG
GAAAGTCCCGCAGAGCTTGAGGTCCTCACTGTCACCGCCGAAGCGGAGCGCGCGGAGGGCCCGGTGCAGGGC
TACCGGGCCAATCGGTCGGCCAGCGCGACGCGCACCGACACCCGTATCGAGGACATCCCGCAAGCCATCAGC
GTGGTGCCGCGCCAGGTGCTCGACGACCTTGACAGCGCTCGTATCGAACGGGCGCTGGACTTCGCCGGCGGG
GTCTCGCGGCAGAACAACTTCGGCGGCCTGACGATGTTCGAGTACAACGTCCGTGGCTTCACCACTTCGGAG
TTCTACCGCGACGGCTTCAGCGCCAACCGCGGCTATATGAACGCCCCGGACAGCGCCACCATCGAGCGCGTG
GAAATCCTCAAGGGACCGGCCTCCAGCCTGTACGGGCGCGGCGATCCCGGCGGCACGGTGAACCTGGTGACC
AAGAAGCCCCAGGCCGAGCGCTTCGCCCGCTTGCATGCCAGCGCCGGCAGCTGGGACCGCTACCGCTCGACC
CTGGACCTGAACACGCCGCTGGACGAAGAGGGCGACCTGCTCTACCGGATGAACCTGGCGGTGGAGGACAGC
AAGGGCTTCCGCGACTACGCCGACGGCCAGCGCCTGCTGGTGGCGCCATCGTTCAGCTGGCAACTGGACCCG
GACACCTCGTTGCTGGTGGAAGCCGAGGTGGTGCGCAACCGCCAGGTCTTCGACCGCGGCACCGTGGCGCCG
CACAACCACCTGGGCAGCCTGCCGCGCTCGCGGTTCTTCGGCGAACCGGACGACGGCAAGATCGACAACAAC
AACGAAACCCTCCAGGCCACCCTGCGCCATCACCTCAACGAGCAGTGGAGCCTGCGCCTGGCCAGCCACTAC
AAGCATGGCCACCTGGACGGCTACGCCTCGGAGAACTCCAGCCTCGCCGCCGACGGCTACACCCTGCGCCGG
GAGTACCGCTACCGCGACTTCGAGTGGCACGACAGCATCACCCAGCTCGACCTGCTCGGCGACCTCCATACC
GGCTCGATCCGCCACCAGTTGCTGATGGGCCTGGAGTACGAGCGCTACCACAACGACGAACTGATCCTGCGT
AGCATCCCGTCGCGCAACCCCTATGCCATCGACATCCGCCGGCCGGTCTACGGCCAGCCGAAACCACCCTTC
GGACGCGACGACCGCAACCACGAGGAAGTCGACGCGATGGCCCTCAACCTGCAGGACCAGATCGAGTTCAAC
GAGAAATGGCGCGGCCTGCTCGGCGTGCGCTTCGACCGCTACCGCCAGGACATGAACGCCACGCGCCTGAAC
AATGGCCGCTTCCGCGACACCAGCTCGCAGCAGACCCAGCGTGCCGCCACCCCGCGCATCGGCGTGTTGTAC
CAGGCGACCCCGGAGGTCGGCCTGTTCGCCAACGCCTCGAAATCCTTCAAGCCCAACGGCGGTACCGACATG
GCCGGCAAGGCCTTCGACCCGGAGGAGGGGCGCGGCTACGAGGCGGGGGTGAAGCTCGACCTGCTCGATGGC
CGGCTGGGCATGACCCTCGCCGCGTTCCACCTGAAAAAGAAGAACGTGCTCACCGCCGACCCGAGCAATCCC
GGTTACCAGCAGACCGCCGGCGAGGCGCGCAGCCAGGGCTTCGACCTGCAGTTCAGCGGCCAGCTCACCGAG
CAGTTGCGGCTGATCGGCGCCTACGCCTATATCGACGCCGAAGTGACCAAGGACGAGAACATCGCCCGTGGC
AGCCGCCTGCTCAACGTGCCGAAGCACAGCGGCAGCCTGATGGGCGTCTACGAGTTCCGCGAAGGCTGGCTG
CACGGCGCCGACGCCGGCGCGGCGGTCAACTATGTCGGCGAGCGCGCCGGCGACAGCAGCGACAGCGGCTTC
GAACTGCCGGCCTACACCACCGTCGACCTGCTCGCGCACTATCCGCTGGCGAGCAATGCGACCCTCGGGGTG
AACGTCAACAACCTCTTCGATCGTCGCTACTACGAGCGTTCCTATAACAACGTCTGGGTCGCCCCCGGCGAG
CCGCGCAACCTGACCATGAGCCTGACCCTGAACTACTGA
Translation:
MRVSVSLVLGVGLGCSSPALWAETESPAELEVLTVTAEAERAEGPVQGYRANRSASATRTDTRIEDIPQAIS
VVPRQVLDDLDSARIERALDFAGGVSRQNNFGGLTMFEYNVRGFTTSEFYRDGFSANRGYMNAPDSATIERV
EILKGPASSLYGRGDPGGTVNLVTKKPQAERFARLHASAGSWDRYRSTLDLNTPLDEEGDLLYRMNLAVEDS
KGFRDYADGQRLLVAPSFSWQLDPDTSLLVEAEVVRNRQVFDRGTVAPHNHLGSLPRSRFFGEPDDGKIDNN
NETLQATLRHHLNEQWSLRLASHYKHGHLDGYASENSSLAADGYTLRREYRYRDFEWHDSITQLDLLGDLHT
GSIRHQLLMGLEYERYHNDELILRSIPSRNPYAIDIRRPVYGQPKPPFGRDDRNHEEVDAMALNLQDQIEFN
EKWRGLLGVRFDRYRQDMNATRLNNGRFRDTSSQQTQRAATPRIGVLYQATPEVGLFANASKSFKPNGGTDM
AGKAFDPEEGRGYEAGVKLDLLDGRLGMTLAAFHLKKKNVLTADPSNPGYQQTAGEARSQGFDLQFSGQLTE
QLRLIGAYAYIDAEVTKDENIARGSRLLNVPKHSGSLMGVYEFREGWLHGADAGAAVNYVGERAGDSSDSGF
ELPAYTTVDLLAHYPLASNATLGVNVNNLFDRRYYERSYNNVWVAPGEPRNLTMSLTLNY*
AnnotationID:288GeneID:278
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:36
Gene Name:
Confidence Code:3
GeneProduct:putative uter membrane protein precursor
Cell Localization:()
Synonyms:PA4837
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative TonB-dependent siderophore receptor
Functional Category Confidence Code:5
COGs:cd01347,COG1629,COG4773,COG4774,pfam00593
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55970.1| (AE016864) TonB-dependent siderophore receptor, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 703

 Score =  821 bits (2121), Expect = 0.0
 Identities = 423/705 (60%), Positives = 520/705 (73%), Gaps = 18/705 (2%)

>gb|AAN68932.1|AE016524_7 (AE016786) outer membrane ferric siderophore receptor, putative
           [Pseudomonas putida KT2440]
          Length = 696

 Score =  781 bits (2018), Expect = 0.0
 Identities = 405/702 (57%), Positives = 505/702 (71%), Gaps = 23/702 (3%)








 
Structural Features:
cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channel
CD-Length = 672 residues,  99.9% aligned
Score =  297 bits (761), Expect = 3e-81

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  99.3% aligned
Score =  286 bits (730), Expect = 9e-78
Identities = 244/765 (31%), Positives = 344/765 (44%), Gaps = 59/765 (7%)

COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
[Inorganic ion transport and metabolism]
CD-Length = 719 residues,  96.8% aligned
Score =  279 bits (716), Expect = 6e-76
Identities = 192/725 (26%), Positives = 297/725 (40%), Gaps = 52/725 (7%)

COG4774, Fiu, Outer membrane receptor for monomeric catechols 
[Inorganic ion transport and metabolism]
CD-Length = 750 residues,  95.6% aligned
Score =  276 bits (706), Expect = 9e-75
Identities = 208/743 (27%), Positives = 324/743 (43%), Gaps = 73/743 (9%)

pfam00593, TonB_dep_Rec, TonB dependent receptor.
CD-Length = 712 residues, 100.0% aligned
Score =  260 bits (665), Expect = 4e-70
Identities = 169/722 (23%), Positives = 262/722 (36%), Gaps = 88/722 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17701




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35211




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:278_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:278
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
459
                           PA4837_tr
                           translation of PA4837
                           708
                           99.01
                           99.57
                           0
                           3669.0
     

     
     
24290
                           gb|AAG08222.1|AE004896_12
                           (AE004896) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           708
                           99.01
                           99.57
                           0
                           3669.0
     

     
     
24291
                           gb|AAO55970.1|
                           (AE016864) TonB-dependent siderophore receptor, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           719
                           58.97
                           73.01
                           27
                           2142.0
     

     
     
24292
                           gb|AAN68932.1|AE016524_7
                           (AE016786) outer membrane ferric siderophore receptor, putative [Pseudomonas putida KT2440]
                           718
                           57.24
                           71.16
                           32
                           2046.0
     

     
     
24293
                           gb|AAN68763.1|AE016508_4
                           (AE016785) outer membrane ferric siderophore receptor, putative [Pseudomonas putida KT2440]
                           724
                           42.95
                           59.94
                           31
                           1503.0
     

     






      

          
GC ORFID: 43280How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4837Glimmer Score: 

          
Start: 4964163Stop: 4962037

          
Length: 2127


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4837 translation of PA4837Homolog Bit Score 1417.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene258 (ORF: BLASTX 830.0), psyr_15may02_Scaffold11_revised_gene1787 (ORF: BLASTX 572.0), t_PA4837 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAGTCAGTGTGTCGCTTGTCCTCGGTGTCGGCCTCGGTTGCAGCAGTCCGGCGCTCTGGGCGGAAACG 
GAAAGTCCCGCAGAGCTTGAGGTCCTCACTGTCACCGCCGAAGCGGAGCGCGCGGAGGGCCCGGTGCAGGGC 
TACCGGGCCAATCGGTCGGCCAGCGCGACGCGCACCGACACCCGTATCGAGGACATCCCGCAAGCCATCAGC 
GTGGTGCCGCGCCAGGTGCTCGACGACCTTGACAGCGCTCGTATCGAACGGGCGCTGGACTTCGCCGGCGGG 
GTCTCGCGGCAGAACAACTTCGGCGGCCTGACGATGTTCGAGTACAACGTCCGTGGCTTCACCACTTCGGAG 
TTCTACCGCGACGGCTTCAGCGCCAACCGCGGCTATATGAACGCCCCGGACAGCGCCACCATCGAGCGCGTG 
GAAATCCTCAAGGGACCGGCCTCCAGCCTGTACGGGCGCGGCGATCCCGGCGGCACGGTGAACCTGGTGACC 
AAGAAGCCCCAGGCCGAGCGCTTCGCCCGCTTGCATGCCAGCGCCGGCAGCTGGGACCGCTACCGCTCGACC 
CTGGACCTGAACACGCCGCTGGACGAAGAGGGCGACCTGCTCTACCGGATGAACCTGGCGGTGGAGGACAGC 
AAGGGCTTCCGCGACTACGCCGACGGCCAGCGCCTGCTGGTGGCGCCATCGTTCAGCTGGCAACTGGACCCG 
GACACCTCGTTGCTGGTGGAAGCCGAGGTGGTGCGCAACCGCCAGGTCTTCGACCGCGGCACCGTGGCGCCG 
CACAACCACCTGGGCAGCCTGCCGCGCTCGCGGTTCTTCGGCGAACCGGACGACGGCAAGATCGACAACAAC 
AACGAAACCCTCCAGGCCACCCTGCGCCATCACCTCAACGAGCAGTGGAGCCTGCGCCTGGCCAGCCACTAC 
AAGCATGGCCACCTGGACGGCTACGCCTCGGAGAACTCCAGCCTCGCCGCCGACGGCTACACCCTGCGCCGG 
GAGTACCGCTACCGCGACTTCGAGTGGCACGACAGCATCACCCAGCTCGACCTGCTCGGCGACCTCCATACC 
GGCTCGATCCGCCACCAGTTGCTGATGGGCCTGGAGTACGAGCGCTACCACAACGACGAACTGATCCTGCGT 
AGCATCCCGTCGCGCAACCCCTATGCCATCGACATCCGCCGGCCGGTCTACGGCCAGCCGAAACCACCCTTC 
GGACGCGACGACCGCAACCACGAGGAAGTCGACGCGATGGCCCTCAACCTGCAGGACCAGATCGAGTTCAAC 
GAGAAATGGCGCGGCCTGCTCGGCGTGCGCTTCGACCGCTACCGCCAGGACATGAACGCCACGCGCCTGAAC 
AATGGCCGCTTCCGCGACACCAGCTCGCAGCAGACCCAGCGTGCCGCCACCCCGCGCATCGGCGTGTTGTAC 
CAGGCGACCCCGGAGGTCGGCCTGTTCGCCAACGCCTCGAAATCCTTCAAGCCCAACGGCGGTACCGACATG 
GCCGGCAAGGCCTTCGACCCGGAGGAGGGGCGCGGCTACGAGGCGGGGGTGAAGCTCGACCTGCTCGATGGC 
CGGCTGGGCATGACCCTCGCCGCGTTCCACCTGAAAAAGAAGAACGTGCTCACCGCCGACCCGAGCAATCCC 
GGTTACCAGCAGACCGCCGGCGAGGCGCGCAGCCAGGGCTTCGACCTGCAGTTCAGCGGCCAGCTCACCGAG 
CAGTTGCGGCTGATCGGCGCCTACGCCTATATCGACGCCGAAGTGACCAAGGACGAGAACATCGCCCGTGGC 
AGCCGCCTGCTCAACGTGCCGAAGCACAGCGGCAGCCTGATGGGCGTCTACGAGTTCCGCGAAGGCTGGCTG 
CACGGCGCCGACGCCGGCGCGGCGGTCAACTATGTCGGCGAGCGCGCCGGCGACAGCAGCGACAGCGGCTTC 
GAACTGCCGGCCTACACCACCGTCGACCTGCTCGCGCACTATCCGCTGGCGAGCAATGCGACCCTCGGGGTG 
AACGTCAACAACCTCTTCGATCGTCGCTACTACGAGCGTTCCTATAACAACGTCTGGGTCGCCCCCGGCGAG 
CCGCGCAACCTGACCATGAGCCTGACCCTGAACTACTGA