ViewGene
Locus Name:
GeneID:
Location:

GeneID:2779
TrivialName: PA14_58290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58290
PAO1 Ortholog Locus:PA4492
Sequence Length:810
Protein Length:269
Start: 5191812
Stop: 5191003
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07880.1|AE004862_14 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 269/269 (100%), Positives = 269/269 (100%)
Sequence:
ATGCGTATCTTCGGTTCGAGTGCCGGCTGCCTGTCGGTGCTGTTCGGACTGGCCTTCGGGCTGCCTGCACTA
GCCGAGCCTTCGGTGGACCTGGATGGTCCGACGGCAGGCTGGCGCTATTCCGGCCTGCTCGAACAGCCCGAT
GCCCCGCGTGTCGCCTATCCGACTCCGCCCATCGATCGCGGCGGCCAGCGCGGCCGCAGCCTGATCGAAGGA
CACCTGCGCGAACTGGTCGGCACCGAGCGCGCCCAGCGCCTGGTGGTCAACGGCAATCCTCTCCCTCTCTAT
ACCGACGGCGCCGGGCGCTTCGTCCGCCCCTATGCGTTCGGCCACGGCTCCAACGGCGTCCAGGTCGGCAGC
GCCGACGGCAAGATCCTCAAGCGCGTACAGTTCTACGAGGCCAATCGCTCCCAACTGCCGCCGCGCGTGCGC
GTGGTGCTGGGTTGGGACGATCCGAAGGCCGAGCTTGACCTGCATATCGTCACCCCCGATGGCCAGCACGCC
TACTGGGCGCATCCGCGCCTGAGCAACAGCGGCGGCCTCGATCCGGACGGCGTCGACGGGCCCGGCCCGGAG
ATGTTCACCATGGGCGCGCCGCTGCACGGCACCTACCTGATCTACGTGAACTACTGGGGCAACCTCAACAAC
CAGGGCTACAACTTCCAGGCCGGCAGCAACGTACAGGACGTGATCACCGCGCAGGTCAACCTGGTGTTCAAC
GAAAACAGCGTCGACGAGAAGCACGAGACCTTCGTCGTGCCCCTGCGCACCATCGGCGACCTGGTGCTGGTC
AAGACCTTTACCTACTGA
Translation:
MRIFGSSAGCLSVLFGLAFGLPALAEPSVDLDGPTAGWRYSGLLEQPDAPRVAYPTPPIDRGGQRGRSLIEG
HLRELVGTERAQRLVVNGNPLPLYTDGAGRFVRPYAFGHGSNGVQVGSADGKILKRVQFYEANRSQLPPRVR
VVLGWDDPKAELDLHIVTPDGQHAYWAHPRLSNSGGLDPDGVDGPGPEMFTMGAPLHGTYLIYVNYWGNLNN
QGYNFQAGSNVQDVITAQVNLVFNENSVDEKHETFVVPLRTIGDLVLVKTFTY*
AnnotationID:2787GeneID:2779
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 05:05:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4492
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16737.1| (AL646073) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 267

 Score =  285 bits (730), Expect = 1e-76
 Identities = 136/257 (52%), Positives = 178/257 (69%), Gaps = 3/257 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5561




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31535




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2779_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2779
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4521
                           PA4492_tr
                           translation of PA4492
                           269
                           99.99
                           99.99
                           0
                           1440.0
     

     
     
130318
                           gb|AAG07880.1|AE004862_14
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           269
                           99.99
                           99.99
                           0
                           1440.0
     

     
     
130319
                           emb|CAD16737.1|
                           (AL646073) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
                           275
                           49.81
                           66.90
                           14
                           730.0
     

     
     
4522
                           PA4487_tr
                           translation of PA4487
                           276
                           39.49
                           52.89
                           20
                           435.0
     

     
     
130320
                           gb|AAG07875.1|AE004862_9
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           276
                           39.49
                           52.89
                           20
                           435.0
     

     






      

          
GC ORFID: 45781How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4492Glimmer Score: 

          
Start: 4455491Stop: 4454682

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4492 translation of PA4492Homolog Bit Score 559.0

          
Other Homologs:  t_PA4487 (ORF: BLASTX 168.0), t_PA4492 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCTTCGGTTCGAGTGCCGGCTGCCTGTCGGTGCTGTTCGGACTGGCCTTCGGGCTGCCTGCACTA 
GCCGAGCCTTCGGTGGACCTGGATGGTCCGACGGCAGGCTGGCGCTATTCCGGCCTGCTCGAACAGCCCGAT 
GCCCCGCGTGTCGCCTATCCGACTCCGCCCATCGATCGCGGCGGCCAGCGCGGCCGCAGCCTGATCGAAGGA 
CACCTGCGCGAACTGGTCGGCACCGAGCGCGCCCAGCGCCTGGTGGTCAACGGCAATCCTCTCCCTCTCTAT 
ACCGACGGCGCCGGGCGCTTCGTCCGCCCCTATGCGTTCGGCCACGGCTCCAACGGCGTCCAGGTCGGCAGC 
GCCGACGGCAAGATCCTCAAGCGCGTACAGTTCTACGAGGCCAATCGCTCCCAACTGCCGCCGCGCGTGCGC 
GTGGTGCTGGGTTGGGACGATCCGAAGGCCGAGCTTGACCTGCATATCGTCACCCCCGATGGCCAGCACGCC 
TACTGGGCGCATCCGCGCCTGAGCAACAGCGGCGGCCTCGATCCGGACGGCGTCGACGGGCCCGGCCCGGAG 
ATGTTCACCATGGGCGCGCCGCTGCACGGCACCTACCTGATCTACGTGAACTACTGGGGCAACCTCAACAAC 
CAGGGCTACAACTTCCAGGCCGGCAGCAACGTACAGGACGTGATCACCGCGCAGGTCAACCTGGTGTTCAAC 
GAAAACAGCGTCGACGAGAAGCACGAGACCTTCGTCGTGCCCCTGCGCACCATCGGCGACCTGGTGCTGGTC 
AAGACCTTTACCTACTGA