ViewGene
Locus Name:
GeneID:
Location:

GeneID:2778
TrivialName: PA14_12970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12970
PAO1 Ortholog Locus:PA3935
Sequence Length:834
Protein Length:277
Start: 1110241
Stop: 1111074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07322.1|AE004811_5 (AE004811) taurine dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 275/277 (99%), Positives = 276/277 (99%)
Sequence:
ATGAGCCTGACCATCCAACCCATCAGCCCGGCCCTGGGCGCCATCGTTTCCGGCATCGACCTCGGCGCGCCG
CTGGACGACGCCGGCCAGCGGGCCATCGAGCAGGCCCTGCTCGAACACCAGGTGCTGTTCTTCCGCGACCAG
TCGCTGGAACCCAGGAGCCAGGCGCGCTTCGCCGCCCGCTTCGGCGACCTGCACATCCATCCGATCTACCCC
AGCGTGCCGGAGCAGCCGGAGGTCATCGTCCTCGACACCGCGGTCACCGACGTGCGCGACAATGCCATCTGG
CACACCGACGTGACCTTCCTCGAGACCCCGGCGCTGGGAGCCGTGCTCGCCGCCAAGCAATTGCCGCCGTAC
GGCGGCGACACCCTCTGGGCGAGCAGCACGGCGGCCTACGAGGCGCTGTCGGCGCCGCTGCGGCGTCTGCTG
GACGGTCTCACGGCGACCCACGACATCGGCAAGTCCTTCCCCCGCGAGCGCTTCGGCGTCACCGAGGCCGAC
CTGGCGCGCCTGGAGGAGGCCCGCCTGAAGAATCCGCCGCGCTCGCATCCGGTGGTGCGCACCCATCCGCTC
ACCGGGCGCAAGGGCCTGTTCGTCAGCGATGGCTTTACCACCCGCATCAACGAACTGGAGCCGGCCGAGAGC
GATGCGCTGCTGAAGTTCCTCTTCGCCCATGCCACGCGACCTGAATTCACCGTGCGCTGGCGCTGGCAGGAA
AACGACGTGGCGTTCTGGGACAACCGCGTGACGCAGCACTACGCGGTGGACGATTACCGGCCACAGCGGCGG
GTCATGCATCGCGCCACCATCCTCGGCGACAAGCCCTTCTGA
Translation:
MSLTIQPISPALGAIVSGIDLGAPLDDAGQRAIEQALLEHQVLFFRDQSLEPRSQARFAARFGDLHIHPIYP
SVPEQPEVIVLDTAVTDVRDNAIWHTDVTFLETPALGAVLAAKQLPPYGGDTLWASSTAAYEALSAPLRRLL
DGLTATHDIGKSFPRERFGVTEADLARLEEARLKNPPRSHPVVRTHPLTGRKGLFVSDGFTTRINELEPAES
DALLKFLFAHATRPEFTVRWRWQENDVAFWDNRVTQHYAVDDYRPQRRVMHRATILGDKPF*
AnnotationID:2786GeneID:2778
AnnotatorUID: urbach
Modification Date/Time: 2004-04-14 14:02:46
Gene Name:tauD
Confidence Code:2
GeneProduct:TauD
Cell Localization:()
Synonyms:PA3935
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2175,pfam02668
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
59.36% identical to TauD(E.coli gb|AAC73471.1|)
71.02% similar to TauD(E.coli gb|AAC73471.1|)






 
Structural Features:
>gnl|CDD|11883 COG2175, TauD, Probable taurine catabolism dioxygenase
[Secondary metabolites biosynthesis, transport, and catabolism]
Length = 286
Score =  297 bits (762), Expect = 2e-81
Identities = 152/280 (54%), Positives = 182/280 (65%), Gaps = 3/






   
Genomic Context:






   
Comment:


















    ReferenceID:5559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22703




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31719




  
Author/Investigator(s):
        Ryle MJ, Liu A, Muthukumaran RB, Ho RY, Koehntop KD, McCracken J, Que L Jr, Hausinger RP.





  
Title:
        O2- and alpha-ketoglutarate-dependent tyrosyl radical formation in TauD, an alpha-keto acid-dependent non-heme iron dioxygenase.




  
PubMed:
        12590572


MedLine:
        




    
Source:
Biochemistry. 2003 Feb 25;42(7):1854-62.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12590572&itool=iconabstr









           
Homologs By Global Alignment 

           

       



     
Gene ID:2778
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4518
                           PA3935_tr
                           translation of PA3935
                           277
                           99.27
                           99.63
                           0
                           1440.0
     

     
     
130291
                           gb|AAG07322.1|AE004811_5
                           (AE004811) taurine dioxygenase [Pseudomonas aeruginosa PAO1]
                           277
                           99.27
                           99.63
                           0
                           1440.0
     

     
     
130292
                           dbj|BAC00965.1|
                           (AB086390) alpha-ketoglutarate-dependent dioxygenase [Pseudomonas putida]
                           277
                           77.25
                           86.28
                           0
                           1155.0
     

     
     
130293
                           gb|AAN65862.1|AE016214_7
                           (AE016774) alpha-ketoglutarate-dependent taurine dioxygenase [Pseudomonas putida KT2440]
                           277
                           76.89
                           85.55
                           0
                           1148.0
     

     
     
130294
                           gb|AAQ60523.1|
                           (AE016920) taurine dioxygenase [Chromobacterium violaceum ATCC 12472]
                           277
                           65.70
                           77.97
                           0
                           993.0
     

     






      

          
GC ORFID: 45780How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3935Glimmer Score: 

          
Start: 3843697Stop: 3842864

          
Length: 834


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3935 translation of PA3935Homolog Bit Score 559.0

          
Other Homologs:  t_PA3935 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGACCATCCAACCCATCAGCCCGGCCCTGGGCGCCATCGTTTCCGGCATCGACCTCGGCGCGCCG 
CTGGACGACGCCGGCCAGCGGGCCATCGAGCAGGCCCTGCTCGAACACCAGGTGCTGTTCTTCCGCGACCAG 
TCGCTGGAACCCAGGAGCCAGGCGCGCTTCGCCGCCCGCTTCGGCGACCTGCACATCCATCCGATCTACCCC 
AGCGTGCCGGAGCAGCCGGAGGTCATCGTCCTCGACACCGCGGTCACCGACGTGCGCGACAATGCCATCTGG 
CACACCGACGTGACCTTCCTCGAGACCCCGGCGCTGGGAGCCGTGCTCGCCGCCAAGCAATTGCCGCCGTAC 
GGCGGCGACACCCTCTGGGCGAGCAGCACGGCGGCCTACGAGGCGCTGTCGGCGCCGCTGCGGCGTCTGCTG 
GACGGTCTCACGGCGACCCACGACATCGGCAAGTCCTTCCCCCGCGAGCGCTTCGGCGTCACCGAGGCCGAC 
CTGGCGCGCCTGGAGGAGGCCCGCCTGAAGAATCCGCCGCGCTCGCATCCGGTGGTGCGCACCCATCCGCTC 
ACCGGGCGCAAGGGCCTGTTCGTCAGCGATGGCTTTACCACCCGCATCAACGAACTGGAGCCGGCCGAGAGC 
GATGCGCTGCTGAAGTTCCTCTTCGCCCATGCCACGCGACCTGAATTCACCGTGCGCTGGCGCTGGCAGGAA 
AACGACGTGGCGTTCTGGGACAACCGCGTGACGCAGCACTACGCGGTGGACGATTACCGGCCACAGCGGCGG 
GTCATGCATCGCGCCACCATCCTCGGCGACAAGCCCTTCTGA