ViewGene
Locus Name:
GeneID:
Location:

GeneID:2776
TrivialName: PA14_42120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42120
PAO1 Ortholog Locus:PA1734
Sequence Length:822
Protein Length:273
Start: 3757395
Stop: 3758216
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05123.1|AE004599_8 (AE004599) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 271/273 (99%), Positives = 272/273 (99%)
Sequence:
ATGCCTGTCACTCTCCCGCGCCTGGCGTTGCTAGGTGCCCTGCTCTTCCCTGTGGCTGCCGCCTGGGCCGCC
GAGCTCCGCCTGGAACTGCCGGGGGGCACGCAGACCTGGAGCAGCGAAGAACTGCTCAGGCATCCGCAGGCC
CGCGACCTGGACATCCCGGCCGACGTCGCCTACCGCCGGAACATGCGCTACCGCGCCGTGCCACTGGCGGCC
TTGTTGAAAGGCGTGCATCCCGAAGACCATTTGCAGGCCGTGGCCAGCGATGGCTTCGCCGCCGAATTGCCG
GCCGCCCCGCTGCTCGCCGAACAGGGCTCGCAAGCCTGGCTGGCGATAGAGGATCCGCAGCGCCCCTGGCCG
CCGTTGGGCGCCGGCAAGCCGTCCGCCGGGCCGTTCTATCTGGTCTGGAGCAAACCCGAGGAAAAACGCATC
GGTCCGGAGCAATGGCCCTTCCAGGTCGTCCGCATCCGCTATCAGCCCCCTCTGGCCGAACGCTTCCCGGCC
CTGCTGCCGGCCGCCGACGCCAGCGCGGAAGTGCGCGCCGGCTTCGCCGTGTTCCAGAAGAACTGCCTGGCC
TGCCACCGTCTCAACGGTGCCGGCGACGCCCAGTTCGGCCCGGACCTGAACCTGCCGTACAACCCCACCGAG
TACTTCCAGCCGCAATTCCTCTCCCGCTACATCCGCGACCCGCAGGCGCTGCGGCAATGGCCACAGGCGAAA
ATGCCGGCGTTCCCGGAACGGGTGATCGACGACCAGGAGTTGCGCCAGCTGATCGGCTACCTGCGCCACATG
GCCGGCCGCAAAGCGGGCGCGGCCGGCTGA
Translation:
MPVTLPRLALLGALLFPVAAAWAAELRLELPGGTQTWSSEELLRHPQARDLDIPADVAYRRNMRYRAVPLAA
LLKGVHPEDHLQAVASDGFAAELPAAPLLAEQGSQAWLAIEDPQRPWPPLGAGKPSAGPFYLVWSKPEEKRI
GPEQWPFQVVRIRYQPPLAERFPALLPAADASAEVRAGFAVFQKNCLACHRLNGAGDAQFGPDLNLPYNPTE
YFQPQFLSRYIRDPQALRQWPQAKMPAFPERVIDDQELRQLIGYLRHMAGRKAGAAG*
AnnotationID:2784GeneID:2776
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:48
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c protein
Cell Localization:()
Synonyms:PA1734
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00034
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67460.1|AE016373_2 (AE016780) cytochrome c family protein [Pseudomonas putida KT2440]
          Length = 266

 Score =  338 bits (867), Expect = 2e-92
 Identities = 167/264 (63%), Positives = 199/264 (75%), Gaps = 6/264 (2%)

>emb|CAD16942.1| (AL646074) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 278

 Score =  228 bits (580), Expect = 4e-59
 Identities = 121/252 (48%), Positives = 157/252 (62%), Gaps = 6/252 (2%)






 
Structural Features:
pfam00034, Cytochrom_C, Cytochrome c. 
CD-Length = 83 residues,  94.0% aligned
Score = 46.3 bits (109), Expect = 4e-06
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 6/84 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5555




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22699




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37173




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2776_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2776
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4516
                           PA1734_tr
                           translation of PA1734
                           273
                           99.26
                           99.63
                           0
                           1440.0
     

     
     
130204
                           gb|AAG05123.1|AE004599_8
                           (AE004599) hypothetical protein PA1734 [Pseudomonas aeruginosa PAO1]
                           273
                           99.26
                           99.63
                           0
                           1440.0
     

     
     
130205
                           gb|AAN67460.1|AE016373_2
                           (AE016780) cytochrome c family protein [Pseudomonas putida KT2440]
                           275
                           61.09
                           72.72
                           11
                           868.0
     

     
     
130206
                           emb|CAD16942.1|
                           (AL646074) PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
                           294
                           44.21
                           57.14
                           37
                           594.0
     

     






      

          
GC ORFID: 45778How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1734Glimmer Score: 

          
Start: 1196514Stop: 1195693

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1734 translation of PA1734Homolog Bit Score 559.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7110 (ORF: BLASTX 344.0), t_PA1734 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGTCACTCTCCCGCGCCTGGCGTTGCTAGGTGCCCTGCTCTTCCCTGTGGCTGCCGCCTGGGCCGCC 
GAGCTCCGCCTGGAACTGCCGGGGGGCACGCAGACCTGGAGCAGCGAAGAACTGCTCAGGCATCCGCAGGCC 
CGCGACCTGGACATCCCGGCCGACGTCGCCTACCGCCGGAACATGCGCTACCGCGCCGTGCCACTGGCGGCC 
TTGTTGAAAGGCGTGCATCCCGAAGACCATTTGCAGGCCGTGGCCAGCGATGGCTTCGCCGCCGAATTGCCG 
GCCGCCCCGCTGCTCGCCGAACAGGGCTCGCAAGCCTGGCTGGCGATAGAGGATCCGCAGCGCCCCTGGCCG 
CCGTTGGGCGCCGGCAAGCCGTCCGCCGGGCCGTTCTATCTGGTCTGGAGCAAACCCGAGGAAAAACGCATC 
GGTCCGGAGCAATGGCCCTTCCAGGTCGTCCGCATCCGCTATCAGCCCCCTCTGGCCGAACGCTTCCCGGCC 
CTGCTGCCGGCCGCCGACGCCAGCGCGGAAGTGCGCGCCGGCTTCGCCGTGTTCCAGAAGAACTGCCTGGCC 
TGCCACCGTCTCAACGGTGCCGGCGACGCCCAGTTCGGCCCGGACCTGAACCTGCCGTACAACCCCACCGAG 
TACTTCCAGCCGCAATTCCTCTCCCGCTACATCCGCGACCCGCAGGCGCTGCGGCAATGGCCACAGGCGAAA 
ATGCCGGCGTTCCCGGAACGGGTGATCGACGACCAGGAGTTGCGCCAGCTGATCGGCTACCTGCGCCACATG 
GCCGGCCGCAAAGCGGGCGCGGCCGGCTGA