ViewGene
Locus Name:
GeneID:
Location:

GeneID:2775
TrivialName: PA14_08130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08130
PAO1 Ortholog Locus:PA0626
Sequence Length:873
Protein Length:290
Start: 698536
Stop: 699408
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04015.1|AE004498_10 (AE004498) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 288/290 (99%), Positives = 289/290 (99%)
Sequence:
ATGGCATATCTGGAACAATTGCAGGCCGGCCTGAGGTACCTGGGTCGCGCCGGCGAGTCCGGACGCAAGAGT
CTGGACAAGGTGGTCGCTCCGGTGAACGGTGCGATCAGCGAGATCCGCGGCGCAGCCGCGGAGCTGGAGAAC
CTGCCCGGCGTATCGCCGGAAATGGCTGCCCGGCTGCAGCGTGCCATGCGCGGCATCGGCCAGGCGCAGGGC
AAGGTGAACCGCGTGGTCTCCACCTATGACCGGGCGAGCCGGGCGTTGCTTGGTATCGACGAACGCGTGGAT
GCGCTGAAGGTGCAGGTAAACAGTGCCGCGCAGGCGGTCGGCAAGGTCGCTGGCGACATCAGTCCGACGCTG
GCGGGGGTGCTGCCGTCGTGGCTGCTGGCACCCTCGGCGACGCCCCCGAGCGAGGCCGCAGCGCCCTTGCCG
CACCTGTTGGTACTGCAGCCGCTGACCGCCAATGCCCAACCGTTCTACTTCAACCTGAATACTGCCGCCTTC
GACGCCCTGCAGCGCAACAGTGCCTACAACTGGAGCGGGCAGGTGCGCCTGGGTCGGCGGCCGGCGCTGCAG
AGCGTCGGCATGGGCGAGGAGAGCATCCTGCTCAAGGGGGCGGTATTCCCGCTGCGTCGACAGGTAGGTAAC
CAGGAAAAGGTCGTCGGTCTGGAGCAGCTCGAAGCGCTGCGCCGGTTGGCGGAGCGGCGTGAGCCGCTGATC
CTGAGCAGCGGCTACGGCGAGGTGCAGATGGGCCTCTGGTGTCTGGTGCGGATCAGCGAGAACCAGAGCGCC
CTGCTGGGCAACGGCGCTCCCCGCAAACAAACCTTCGACCTGGAGTTCAAGCGCTATGGCGACGACCTGCCG
AACCGCTGA
Translation:
MAYLEQLQAGLRYLGRAGESGRKSLDKVVAPVNGAISEIRGAAAELENLPGVSPEMAARLQRAMRGIGQAQG
KVNRVVSTYDRASRALLGIDERVDALKVQVNSAAQAVGKVAGDISPTLAGVLPSWLLAPSATPPSEAAAPLP
HLLVLQPLTANAQPFYFNLNTAAFDALQRNSAYNWSGQVRLGRRPALQSVGMGEESILLKGAVFPLRRQVGN
QEKVVGLEQLEALRRLAERREPLILSSGYGEVQMGLWCLVRISENQSALLGNGAPRKQTFDLEFKRYGDDLP
NR*
AnnotationID:2783GeneID:2775
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 13:01:05
Gene Name:
Confidence Code:3
GeneProduct:putative tail formation protein
Cell Localization:()
Synonyms:gpU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:putative pyocin R2_PP
Functional Category Confidence Code:5
COGs:pfam06995
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68671.1|AE016496_5 (AE016785) pyocin R2_PP, tail formation protein [Pseudomonas putida
           KT2440]
          Length = 281

 Score =  273 bits (697), Expect = 1e-72
 Identities = 146/289 (50%), Positives = 187/289 (64%), Gaps = 9/289 (3%)






 
Structural Features:
pfam06995, Phage P2 GpU.
CD-Length = 121 residues, 100.0% aligned
Score =  118 bits (296), Expect = 1e-27
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 9/130 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5553




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22697




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33883




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2775_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2775
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4515
                           PA0626_tr
                           translation of PA0626
                           290
                           99.31
                           99.65
                           0
                           1442.0
     

     
     
130200
                           gb|AAG04015.1|AE004498_10
                           (AE004498) hypothetical protein PA0626 [Pseudomonas aeruginosa PAO1]
                           290
                           99.31
                           99.65
                           0
                           1442.0
     

     
     
130201
                           dbj|BAA83165.1|
                           (AB030825) PRF21~similar to U genes of P2 and phiCTX: tail formation [Pseudomonas aeruginosa]
                           290
                           99.31
                           99.65
                           0
                           1442.0
     

     
     
130202
                           gb|AAN68671.1|AE016496_5
                           (AE016785) pyocin R2_PP, tail formation protein [Pseudomonas putida KT2440]
                           290
                           50.34
                           64.48
                           9
                           701.0
     

     
     
130203
                           gb|AAO56870.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           290
                           45.51
                           61.37
                           36
                           670.0
     

     






      

          
GC ORFID: 45777How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0626Glimmer Score: 

          
Start: 6499879Stop: 6500751

          
Length: 873


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0626 translation of PA0626Homolog Bit Score 560.0

          
Other Homologs:  t_PA0626 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCATATCTGGAACAATTGCAGGCCGGCCTGAGGTACCTGGGTCGCGCCGGCGAGTCCGGACGCAAGAGT 
CTGGACAAGGTGGTCGCTCCGGTGAACGGTGCGATCAGCGAGATCCGCGGCGCAGCCGCGGAGCTGGAGAAC 
CTGCCCGGCGTATCGCCGGAAATGGCTGCCCGGCTGCAGCGTGCCATGCGCGGCATCGGCCAGGCGCAGGGC 
AAGGTGAACCGCGTGGTCTCCACCTATGACCGGGCGAGCCGGGCGTTGCTTGGTATCGACGAACGCGTGGAT 
GCGCTGAAGGTGCAGGTAAACAGTGCCGCGCAGGCGGTCGGCAAGGTCGCTGGCGACATCAGTCCGACGCTG 
GCGGGGGTGCTGCCGTCGTGGCTGCTGGCACCCTCGGCGACGCCCCCGAGCGAGGCCGCAGCGCCCTTGCCG 
CACCTGTTGGTACTGCAGCCGCTGACCGCCAATGCCCAACCGTTCTACTTCAACCTGAATACTGCCGCCTTC 
GACGCCCTGCAGCGCAACAGTGCCTACAACTGGAGCGGGCAGGTGCGCCTGGGTCGGCGGCCGGCGCTGCAG 
AGCGTCGGCATGGGCGAGGAGAGCATCCTGCTCAAGGGGGCGGTATTCCCGCTGCGTCGACAGGTAGGTAAC 
CAGGAAAAGGTCGTCGGTCTGGAGCAGCTCGAAGCGCTGCGCCGGTTGGCGGAGCGGCGTGAGCCGCTGATC 
CTGAGCAGCGGCTACGGCGAGGTGCAGATGGGCCTCTGGTGTCTGGTGCGGATCAGCGAGAACCAGAGCGCC 
CTGCTGGGCAACGGCGCTCCCCGCAAACAAACCTTCGACCTGGAGTTCAAGCGCTATGGCGACGACCTGCCG 
AACCGCTGA