ViewGene
Locus Name:
GeneID:
Location:

GeneID:2773
TrivialName: PA14_64440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64440
PAO1 Ortholog Locus:PA4872
Sequence Length:864
Protein Length:287
Start: 5741404
Stop: 5740541
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08257.1|AE004900_11 (AE004900) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 287/287 (100%), Positives = 287/287 (100%)
Sequence:
ATGCATAGAGCCTCACACCATGAGTTGCGTGCGATGTTTCGCGCGCTGTTGGACTCCTCCCGTTGCTACCAC
ACCGCTTCCGTGTTCGATCCCATGTCGGCGCGCATCGCCGCCGACCTCGGCTTCGAGTGCGGCATCCTCGGC
GGTTCGGTGGCTTCCCTGCAGGTCCTGGCGGCGCCGGACTTCGCCCTGATCACCCTCAGCGAATTCGTCGAG
CAGGCCACCCGCATCGGCCGGGTGGCGCGCCTGCCGGTGATCGCCGACGCCGACCACGGCTACGGCAACGCG
CTGAACGTAATGCGTACGGTGGTCGAACTGGAGCGCGCCGGAATCGCCGCGCTGACCATCGAGGACACCCTG
CTGCCGGCGCAGTTCGGGCGCAAGTCCACCGACCTGATCTGCGTCGAGGAAGGCGTCGGCAAGATCCGCGCG
GCCCTGGAGGCGAGGGTCGACCCGGCGTTGACCATCATTGCCCGGACCAACGCCGAACTGATCGACGTCGAT
GCGGTGATCCAGCGCACCCTGGCCTACCAGGAAGCCGGCGCCGATGGCATCTGCCTGGTCGGCGTGCGCGAC
TTCGCCCACCTCGAGGCGATCGCCGAGCACCTGCACATCCCGCTGATGCTGGTCACCTACGGTAATCCGCAA
CTGCGCGACGACGCCCGCCTGGCGCGGCTCGGCGTGCGTGTCGTGGTCAACGGCCACGCCGCCTATTTCGCC
GCGATCAAGGCGACCTACGACTGCCTGCGCGAGGAGCGCGGTGCGGTGGCCTCGGACCTGACCGCCTCGGAG
CTGTCGAAGAAGTACACCTTCCCCGAGGAATACCAGGCCTGGGCCCGCGACTACATGGAAGTCAAAGAGTAG
Translation:
MHRASHHELRAMFRALLDSSRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVE
QATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRA
ALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHLHIPLMLVTYGNPQ
LRDDARLARLGVRVVVNGHAAYFAAIKATYDCLREERGAVASDLTASELSKKYTFPEEYQAWARDYMEVKE*
AnnotationID:2781GeneID:2773
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:23
Gene Name:
Confidence Code:3
GeneProduct:carboxyphosphonoenolpyruvate phosphonomutase
Cell Localization:()
Synonyms:bcpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2513
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67012.1|AE016330_1 (AE016779) carboxyphosphonoenolpyruvate phosphonomutase, putative
           [Pseudomonas putida KT2440]
          Length = 291

 Score =  438 bits (1127), Expect = e-122
 Identities = 225/289 (77%), Positives = 254/289 (87%), Gaps = 2/289 (0%)

>gb|AAO54964.1| (AE016860) carboxyphosphonoenolpyruvate phosphonomutase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 289

 Score =  417 bits (1073), Expect = e-116
 Identities = 214/289 (74%), Positives = 244/289 (84%), Gaps = 2/289 (0%)








 
Structural Features:
COG2513, PrpB, PEP phosphonomutase and related enzymes 
[Carbohydrate transport and metabolism]
CD-Length = 289 residues,  99.3% aligned
Score =  237 bits (607), Expect = 8e-64
Identities = 107/288 (37%), Positives = 146/288 (50%), Gaps = 7/288 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22693




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35185




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2773_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2773
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4513
                           PA4872_tr
                           translation of PA4872
                           287
                           99.99
                           99.99
                           0
                           1444.0
     

     
     
130137
                           gb|AAG08257.1|AE004900_11
                           (AE004900) hypothetical protein PA4872 [Pseudomonas aeruginosa PAO1]
                           287
                           99.99
                           99.99
                           0
                           1444.0
     

     
     
130138
                           gb|AAN67012.1|AE016330_1
                           (AE016779) carboxyphosphonoenolpyruvate phosphonomutase, putative [Pseudomonas putida KT2440]
                           291
                           77.31
                           87.28
                           4
                           1129.0
     

     
     
130139
                           gb|AAO54964.1|
                           (AE016860) carboxyphosphonoenolpyruvate phosphonomutase [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           74.04
                           84.42
                           2
                           1075.0
     

     
     
130140
                           emb|CAE28615.1|
                           (BX572603) conserved unknown protein [Rhodopseudomonas palustris CGA009]
                           294
                           46.59
                           58.50
                           13
                           591.0
     

     






      

          
GC ORFID: 45775How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4872Glimmer Score: 

          
Start: 5005085Stop: 5004222

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4872 translation of PA4872Homolog Bit Score 560.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4857 (ORF: BLASTX 420.0), t_PA4872 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAGAGCCTCACACCATGAGTTGCGTGCGATGTTTCGCGCGCTGTTGGACTCCTCCCGTTGCTACCAC 
ACCGCTTCCGTGTTCGATCCCATGTCGGCGCGCATCGCCGCCGACCTCGGCTTCGAGTGCGGCATCCTCGGC 
GGTTCGGTGGCTTCCCTGCAGGTCCTGGCGGCGCCGGACTTCGCCCTGATCACCCTCAGCGAATTCGTCGAG 
CAGGCCACCCGCATCGGCCGGGTGGCGCGCCTGCCGGTGATCGCCGACGCCGACCACGGCTACGGCAACGCG 
CTGAACGTAATGCGTACGGTGGTCGAACTGGAGCGCGCCGGAATCGCCGCGCTGACCATCGAGGACACCCTG 
CTGCCGGCGCAGTTCGGGCGCAAGTCCACCGACCTGATCTGCGTCGAGGAAGGCGTCGGCAAGATCCGCGCG 
GCCCTGGAGGCGAGGGTCGACCCGGCGTTGACCATCATTGCCCGGACCAACGCCGAACTGATCGACGTCGAT 
GCGGTGATCCAGCGCACCCTGGCCTACCAGGAAGCCGGCGCCGATGGCATCTGCCTGGTCGGCGTGCGCGAC 
TTCGCCCACCTCGAGGCGATCGCCGAGCACCTGCACATCCCGCTGATGCTGGTCACCTACGGTAATCCGCAA 
CTGCGCGACGACGCCCGCCTGGCGCGGCTCGGCGTGCGTGTCGTGGTCAACGGCCACGCCGCCTATTTCGCC 
GCGATCAAGGCGACCTACGACTGCCTGCGCGAGGAGCGCGGTGCGGTGGCCTCGGACCTGACCGCCTCGGAG 
CTGTCGAAGAAGTACACCTTCCCCGAGGAATACCAGGCCTGGGCCCGCGACTACATGGAAGTCAAAGAGTAG