ViewGene
Locus Name:
GeneID:
Location:

GeneID:2772
TrivialName: PA14_23610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23610
PAO1 Ortholog Locus:PA3132
Sequence Length:858
Protein Length:285
Start: 2054277
Stop: 2055134
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06520.1|AE004737_6 (AE004737) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 282/285 (98%), Positives = 283/285 (99%)
Sequence:
ATGAGCAGCCTGACCTGGATTCGCGGTTTCAACGGGACGATCGGCCGCATCGCGCCGCGTTGGACGGCCGAG
CGTATGCGTCGGGCGTTCATGATGCCTGGCGAGTGGCCGCCGAAGGATTGGGAGCTGCCGCTGCTGGCCAGC
TCGGAGCGCGTCACTCTGCGCTTCGGGCTGTCGGTGTTGCGCTGGGGCGAGGGGCCGGCAGTCCTGCTGCTG
CATGGCTGGGCCGGCAGGCCGACACAGTTCGCCCATCTGATCGAGCAACTGGTCGGCGCGGGTTATTCGGTG
TATGCCCTCGATGCGCCGGCCCATGGCCGCTCGCCGGGCAGGGAGGCGAACGTGGTGCTGTTCGCCCATGCC
TTGCTGGAGGCCGCTGGCGAGTTGCCGCCGCTGCGTGCGGTGGTCGGTCATTCCCTGGGTGGCGCGGCGGCG
TTGCTGGCGGCCCAGATGGGGCTGCGCAGCGAAGCGCTGGTGACGGTCTCGGCGCCGTCGCGGATTCTCGAA
CAGTTGCGCCTGTTCGCTCGTTTCGTCGGTTTGCCGGCCCTGGCTCGCTCGCATTTCATCCGCCTGGTCGAG
CGTCAGGCGGGCATATCCGCGGCGTGCCTGGATGTGGCGCGCTACCGTCTGGAAATGCCCGGACTGGTGGTG
CATGCCGACGACGACCCGCGCGTAGCGGTGGAAAATGCCGAGCGCATCCATGCCGCCTGGCCGGCTAGTCGC
TTGCTGCGCCTGCCGGGCGGCGGCCACCACCGACTGCTCGGCGAGCGCAGGCTGAGCGAGTCGCTGCTGGCG
CTGCTCGAGGAGCGTCCGGCGATGCGCGCTTGCCGGCGCGTGGAAAAGACGGCGAGCGCTTCCTGA
Translation:
MSSLTWIRGFNGTIGRIAPRWTAERMRRAFMMPGEWPPKDWELPLLASSERVTLRFGLSVLRWGEGPAVLLL
HGWAGRPTQFAHLIEQLVGAGYSVYALDAPAHGRSPGREANVVLFAHALLEAAGELPPLRAVVGHSLGGAAA
LLAAQMGLRSEALVTVSAPSRILEQLRLFARFVGLPALARSHFIRLVERQAGISAACLDVARYRLEMPGLVV
HADDDPRVAVENAERIHAAWPASRLLRLPGGGHHRLLGERRLSESLLALLEERPAMRACRRVEKTASAS*
AnnotationID:2780GeneID:2772
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 09:09:46
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA3132
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00561
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.
CD-Length = 224 residues,  94.6% aligned
Score = 50.6 bits (120), Expect = 2e-07
Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 56/214 (26%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38096




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2772_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2772
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4512
                           PA3132_tr
                           translation of PA3132
                           285
                           98.94
                           99.29
                           0
                           1444.0
     

     
     
130135
                           gb|AAG06520.1|AE004737_6
                           (AE004737) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           285
                           98.94
                           99.29
                           0
                           1444.0
     

     
     
130136
                           gb|AAN67594.1|AE016389_2
                           (AE016781) hydrolase, putative [Pseudomonas putida KT2440]
                           300
                           57.66
                           71.33
                           22
                           879.0
     

     






      

          
GC ORFID: 45774How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3132Glimmer Score: 

          
Start: 2899654Stop: 2898797

          
Length: 858


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3132 translation of PA3132Homolog Bit Score 560.0

          
Other Homologs:  t_PA3132 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGCCTGACCTGGATTCGCGGTTTCAACGGGACGATCGGCCGCATCGCGCCGCGTTGGACGGCCGAG 
CGTATGCGTCGGGCGTTCATGATGCCTGGCGAGTGGCCGCCGAAGGATTGGGAGCTGCCGCTGCTGGCCAGC 
TCGGAGCGCGTCACTCTGCGCTTCGGGCTGTCGGTGTTGCGCTGGGGCGAGGGGCCGGCAGTCCTGCTGCTG 
CATGGCTGGGCCGGCAGGCCGACACAGTTCGCCCATCTGATCGAGCAACTGGTCGGCGCGGGTTATTCGGTG 
TATGCCCTCGATGCGCCGGCCCATGGCCGCTCGCCGGGCAGGGAGGCGAACGTGGTGCTGTTCGCCCATGCC 
TTGCTGGAGGCCGCTGGCGAGTTGCCGCCGCTGCGTGCGGTGGTCGGTCATTCCCTGGGTGGCGCGGCGGCG 
TTGCTGGCGGCCCAGATGGGGCTGCGCAGCGAAGCGCTGGTGACGGTCTCGGCGCCGTCGCGGATTCTCGAA 
CAGTTGCGCCTGTTCGCTCGTTTCGTCGGTTTGCCGGCCCTGGCTCGCTCGCATTTCATCCGCCTGGTCGAG 
CGTCAGGCGGGCATATCCGCGGCGTGCCTGGATGTGGCGCGCTACCGTCTGGAAATGCCCGGACTGGTGGTG 
CATGCCGACGACGACCCGCGCGTAGCGGTGGAAAATGCCGAGCGCATCCATGCCGCCTGGCCGGCTAGTCGC 
TTGCTGCGCCTGCCGGGCGGCGGCCACCACCGACTGCTCGGCGAGCGCAGGCTGAGCGAGTCGCTGCTGGCG 
CTGCTCGAGGAGCGTCCGGCGATGCGCGCTTGCCGGCGCGTGGAAAAGACGGCGAGCGCTTCCTGA