ViewGene
Locus Name:
GeneID:
Location:

GeneID:2771
TrivialName: PA14_26540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26540
PAO1 Ortholog Locus:PA2902
Sequence Length:849
Protein Length:282
Start: 2312746
Stop: 2313594
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06290.1|AE004716_8 (AE004716) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/282 (99%), Positives = 282/282 (100%)
Sequence:
ATGTCCTTTCGCTGTTCCCCGTGCCGCCTGGCCGGCATCCTGCTGGCGGCGCTGTTCGTTCCGGGGCTGGCC
GCGGCGGCCGGCTCCTGCGAGCGCCTGGTGGCCACCGGCAACCCGGAGTACCCACCCTACCTGTGGCGCGAC
CCGCAGGATCCGAAGCGCCTGATCGGAGCCAATGCCGACCTGTTGCAGCGCCTGGGCAAGGAGCTCGGCGTG
CGCATCGACGTGCTCTACAGCGGCTCCTGGGAGAAGGCCCAGGAAGAGGTGACCAGCGGTCGCGCCGACCTG
CTCGCCGGGGCCTACCTGACCCTGGCACGGCTCGGCAGCATGGACTACGTGCATCCGCCGTTCCTGATGACC
AGCGGGGTGGTCTGGGTGAACAAGGACGCCGCGTTCCCGTTCATCGGCCGCGACGACCTGATCGGGCACAAG
GGCAGCGTGCTGGCCGGCAGCAGCCTGGGCGAGGAGTTCGACCGCTTCGCCAAGGCCAGTCTCGACCTGAAG
CCGGTGCCGAGCCTGACCCAGGGCTTGCAGGACCTGATGCTCAAACGCAGCGAGTTCCTCCTCTACCAGGCG
CTGCCCGGGCAGGCCCAGGTCGAGGCGCTGGGCATGGCCGACGACCTGGAGGCGCTGGAACCGGTGCTGAGC
AGCGAGGGGCTGTACCTGACGCTGTCGCACAACTCCGCTTGCAACGATCCGTGGCTGCGCGGACAACTGGCG
AAAAAGATGACAGAATTGTCGGCTGCCGGCGTTCCCGTAACGCTCTTGCAGGACAATCTCGAACGCTGGAAA
GCCCAGCAATTGCCGGCTTCCGGCGCCAGTTCGACTACGCAGGAAAGTGACTTGTGA
Translation:
MSFRCSPCRLAGILLAALFVPGLAAAAGSCERLVATGNPEYPPYLWRDPQDPKRLIGANADLLQRLGKELGV
RIDVLYSGSWEKAQEEVTSGRADLLAGAYLTLARLGSMDYVHPPFLMTSGVVWVNKDAAFPFIGRDDLIGHK
GSVLAGSSLGEEFDRFAKASLDLKPVPSLTQGLQDLMLKRSEFLLYQALPGQAQVEALGMADDLEALEPVLS
SEGLYLTLSHNSACNDPWLRGQLAKKMTELSAAGVPVTLLQDNLERWKAQQLPASGASSTTQESDL*
AnnotationID:2779GeneID:2771
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2902
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5545




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36131




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2771_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2771
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4511
                           PA2902_tr
                           translation of PA2902
                           282
                           99.64
                           99.99
                           0
                           1444.0
     

     
     
130131
                           gb|AAG06290.1|AE004716_8
                           (AE004716) hypothetical protein PA2902 [Pseudomonas aeruginosa PAO1]
                           282
                           99.64
                           99.99
                           0
                           1444.0
     

     
     
130133
                           gb|AAN69781.1|AE016614_7
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           285
                           47.01
                           61.40
                           15
                           628.0
     

     
     
130132
                           gb|AAN69224.1|AE016557_4
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           282
                           46.45
                           63.47
                           20
                           672.0
     

     
     
130134
                           gb|AAO55703.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           282
                           44.68
                           60.99
                           7
                           624.0
     

     






      

          
GC ORFID: 45773How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2902Glimmer Score: 

          
Start: 2641180Stop: 2640332

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2902 translation of PA2902Homolog Bit Score 560.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene982 (ORF: BLASTX 246.0), t_PA2902 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTTTCGCTGTTCCCCGTGCCGCCTGGCCGGCATCCTGCTGGCGGCGCTGTTCGTTCCGGGGCTGGCC 
GCGGCGGCCGGCTCCTGCGAGCGCCTGGTGGCCACCGGCAACCCGGAGTACCCACCCTACCTGTGGCGCGAC 
CCGCAGGATCCGAAGCGCCTGATCGGAGCCAATGCCGACCTGTTGCAGCGCCTGGGCAAGGAGCTCGGCGTG 
CGCATCGACGTGCTCTACAGCGGCTCCTGGGAGAAGGCCCAGGAAGAGGTGACCAGCGGTCGCGCCGACCTG 
CTCGCCGGGGCCTACCTGACCCTGGCACGGCTCGGCAGCATGGACTACGTGCATCCGCCGTTCCTGATGACC 
AGCGGGGTGGTCTGGGTGAACAAGGACGCCGCGTTCCCGTTCATCGGCCGCGACGACCTGATCGGGCACAAG 
GGCAGCGTGCTGGCCGGCAGCAGCCTGGGCGAGGAGTTCGACCGCTTCGCCAAGGCCAGTCTCGACCTGAAG 
CCGGTGCCGAGCCTGACCCAGGGCTTGCAGGACCTGATGCTCAAACGCAGCGAGTTCCTCCTCTACCAGGCG 
CTGCCCGGGCAGGCCCAGGTCGAGGCGCTGGGCATGGCCGACGACCTGGAGGCGCTGGAACCGGTGCTGAGC 
AGCGAGGGGCTGTACCTGACGCTGTCGCACAACTCCGCTTGCAACGATCCGTGGCTGCGCGGACAACTGGCG 
AAAAAGATGACAGAATTGTCGGCTGCCGGCGTTCCCGTAACGCTCTTGCAGGACAATCTCGAACGCTGGAAA 
GCCCAGCAATTGCCGGCTTCCGGCGCCAGTTCGACTACGCAGGAAAGTGACTTGTGA