ViewGene
Locus Name:
GeneID:
Location:

GeneID:2770
TrivialName: PA14_31650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31650
PAO1 Ortholog Locus:PA2545
Sequence Length:813
Protein Length:270
Start: 2750833
Stop: 2750021
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05933.1|AE004682_5 (AE004682) exodeoxyribonuclease III [Pseudomonas aeruginosa PAO1]
Identities = 269/270 (99%), Positives = 269/270 (99%)
Sequence:
ATGAAAATCGTCTCTTTCAATATCAACGGTCTGCGCGCCCGGCCGCACCAGCTGGCGGCGCTGATCGAGCGG
CACCAGCCCGACGTGATCGGGCTGCAGGAAACCAAGGTCGCCGACGACCAGTTTCCCCAGGCCGAGATCGAG
GCGCTCGGCTACCACGTCCACTACCACGGGCAGAAAGGCCACTACGGCGTCGCCCTGCTCTCCCGCCAGGCG
CCCCTGGAACTGCACCGCGGCTTCCCGAGCGACGGCGAGGAGTCCCAGCGTCGCTTCATCTGGGGCACCTTC
AGCGACGCCCAGGGCAACCCGATCACCGTGATGAACGGTTACTTCCCGCAAGGCGAGAACCGCGAGCATCCG
ACCAAGTTCCCGGCCAAGCAGCGCTTCTACGCCGATCTCCAGTCGCTGCTGGAGAACAGCTTCAAGCCCGAG
CAGGCCCTGGTGGTGATGGGCGACATCAATATCTCGCCGGAAGACTGCGACATCGGCATCGGCGAGGAAAAC
CGCAAGCGCTGGCTGAAGACCGGCAAGTGCAGCTTCCTGCCGGAAGAGCGCGAATGGCTGGCTACCTTGAAG
AACTGGGGCCTGGTCGACAGCTTCCGGGCCCTGAATCCGGAGGTGAACGACCGCTTCAGCTGGTTCGACTAC
CGCAGCCGTGGCTTCGAGGACACCCCCAAGCGCGGCCTGCGCATCGATGTGATCCTGGCCAGCCGGGTGCTG
CAGTCGCGCTTCAAGGACGCCGGCATCGACTACGACCTGCGCGGTATGGAGAAACCCTCCGATCACGCCCCG
ATCTGGCTGGAACTGGCCTGA
Translation:
MKIVSFNINGLRARPHQLAALIERHQPDVIGLQETKVADDQFPQAEIEALGYHVHYHGQKGHYGVALLSRQA
PLELHRGFPSDGEESQRRFIWGTFSDAQGNPITVMNGYFPQGENREHPTKFPAKQRFYADLQSLLENSFKPE
QALVVMGDINISPEDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLKNWGLVDSFRALNPEVNDRFSWFDY
RSRGFEDTPKRGLRIDVILASRVLQSRFKDAGIDYDLRGMEKPSDHAPIWLELA*
AnnotationID:2778GeneID:2770
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 10:10:48
Gene Name:xthA
Confidence Code:2
GeneProduct:exodeoxyribonuclease III
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:exonuclease III
Functional Category Confidence Code:5
COGs:COG0708
Secondary Functional Category(ies):
EC Number:3.1.11.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68498.1|AE016481_14 (AE016784) exodeoxyribonuclease III [Pseudomonas putida KT2440]
          Length = 270

 Score =  468 bits (1203), Expect = e-131
 Identities = 214/270 (79%), Positives = 246/270 (91%)

>gb|AAM85715.1|AE013819_1 (AE013819) exonuclease III [Yersinia pestis KIM]
          Length = 271

 Score =  395 bits (1015), Expect = e-109
 Identities = 186/270 (68%), Positives = 219/270 (81%), Gaps = 3/270 (1%)

>gb|AAG56735.1|AE005398_1 (AE005398) exonuclease III [Escherichia coli O157:H7 EDL933]
          Length = 268

 Score =  377 bits (969), Expect = e-104
 Identities = 176/266 (66%), Positives = 212/266 (79%), Gaps = 3/266 (1%)








 
Structural Features:
COG0708, XthA, Exonuclease III [DNA replication, recombination, and repair]
CD-Length = 261 residues,  99.6% aligned
Score =  316 bits (812), Expect = 2e-87
Identities = 129/272 (47%), Positives = 168/272 (61%), Gaps = 14/272 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5543




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22687




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33119




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2770_cdd.html


    		




 
URL:

















    ReferenceID:34530




  
Author/Investigator(s):
        Saporito SM, Smith-White BJ, Cunningham RP.





  
Title:
        Nucleotide sequence of the xth gene of Escherichia coli K-12.




  
PubMed:
        3049539


MedLine:
        




    
Source:
J Bacteriol. 1988 Oct;170(10):4542-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3049539









           
Homologs By Global Alignment 

           

       



     
Gene ID:2770
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4510
                           PA2545_tr
                           translation of PA2545
                           270
                           99.62
                           99.62
                           0
                           1442.0
     

     
     
130094
                           gb|AAG05933.1|AE004682_5
                           (AE004682) exodeoxyribonuclease III [Pseudomonas aeruginosa PAO1]
                           270
                           99.62
                           99.62
                           0
                           1442.0
     

     
     
130095
                           gb|AAN68498.1|AE016481_14
                           (AE016784) exodeoxyribonuclease III [Pseudomonas putida KT2440]
                           270
                           79.25
                           91.11
                           0
                           1203.0
     

     
     
130096
                           gb|AAO56248.1|
                           (AE016865) exodeoxyribonuclease III [Pseudomonas syringae pv. tomato str. DC3000]
                           270
                           78.51
                           89.25
                           0
                           1185.0
     

     
     
130098
                           emb|CAC90976.1|
                           (AJ414151) exodeoxyribonuclease III [Yersinia pestis CO92]
                           271
                           68.63
                           80.81
                           4
                           1019.0
     

     






      

          
GC ORFID: 45772How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2545Glimmer Score: 

          
Start: 2203093Stop: 2203905

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2545 translation of PA2545Homolog Bit Score 560.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8063 (ORF: BLASTX 470.0), t_PA2545 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGTCTCTTTCAATATCAACGGTCTGCGCGCCCGGCCGCACCAGCTGGCGGCGCTGATCGAGCGG 
CACCAGCCCGACGTGATCGGGCTGCAGGAAACCAAGGTCGCCGACGACCAGTTTCCCCAGGCCGAGATCGAG 
GCGCTCGGCTACCACGTCCACTACCACGGGCAGAAAGGCCACTACGGCGTCGCCCTGCTCTCCCGCCAGGCG 
CCCCTGGAACTGCACCGCGGCTTCCCGAGCGACGGCGAGGAGTCCCAGCGTCGCTTCATCTGGGGCACCTTC 
AGCGACGCCCAGGGCAACCCGATCACCGTGATGAACGGTTACTTCCCGCAAGGCGAGAACCGCGAGCATCCG 
ACCAAGTTCCCGGCCAAGCAGCGCTTCTACGCCGATCTCCAGTCGCTGCTGGAGAACAGCTTCAAGCCCGAG 
CAGGCCCTGGTGGTGATGGGCGACATCAATATCTCGCCGGAAGACTGCGACATCGGCATCGGCGAGGAAAAC 
CGCAAGCGCTGGCTGAAGACCGGCAAGTGCAGCTTCCTGCCGGAAGAGCGCGAATGGCTGGCTACCTTGAAG 
AACTGGGGCCTGGTCGACAGCTTCCGGGCCCTGAATCCGGAGGTGAACGACCGCTTCAGCTGGTTCGACTAC 
CGCAGCCGTGGCTTCGAGGACACCCCCAAGCGCGGCCTGCGCATCGATGTGATCCTGGCCAGCCGGGTGCTG 
CAGTCGCGCTTCAAGGACGCCGGCATCGACTACGACCTGCGCGGTATGGAGAAACCCTCCGATCACGCCCCG 
ATCTGGCTGGAACTGGCCTGA