ViewGene
Locus Name:
GeneID:
Location:

GeneID:2769
TrivialName: PA14_33700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33700
PAO1 Ortholog Locus:PA2396
Sequence Length:828
Protein Length:275
Start: 2990736
Stop: 2991563
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05784.1|AE004665_11 (AE004665) pyoverdine synthetase F [Pseudomonas aeruginosa PAO1]
Identities = 275/275 (100%), Positives = 275/275 (100%)
Sequence:
ATGACGAAAAGGAAACTGGCCTATATCTGGTCCCTGAGAAACGCCGCGGCCGACAAGGCCGGCCAGTACGTG
CCGTACAAGGGCGAACAGCGGTACATGAAGTCGGTACTGGAGTCCTTGGTGGAGGCGCTGAACCAGACTGCG
CTGGGCGATGCCTACGAGCTCGTGGGCGTGATCTACGACGACGACGCGGAGCTGCCTCGCGACCAGGGAAAA
ATCAAGGATTACGGTTTCGCCTATCGTCCCGGGCAGCAATGGTTCTATCCGGCAGACCTGCAGGTGCAAGGC
AAGACCCTGAACGACCTCTTGCTCAGCGTGCCGTCCACCTACCGCCGGTACCCGCGGGGTACCCCCGAGCAT
GTGGCCGGCAAGAGCGATTTCGAGCGACGCCTGCATGACACCCTGGTGGAGCTGGGCGCCGATGTGGTGGTA
TTGGACGGGCTCCTGGTCATCCTCGATGAGCTGGTACGCCCGGGCGCTCCGTTCGCACGGCGGATCATGAAT
ATCCATCCTGGCGTGACGCGCGAGGACTCGCCTTACGAGCGTCGTGGCGCCTATGCGACCCTGGACGCGTTG
TATGGAGCGCGGGGCGAGAAGGTGGTGGATTGGGCGACCATGGAAAAGGTCGCGGTCGAGCCGCTGTACTGG
ACCGGAGCATCGTTCCACTATGTGGACAATGGCATCGATTCCGGCGAAGTGTTCCATGATGTGCTGAAAACG
GAGATTTCACCCGACGACACCATCCTCGAGCTGCGCTGGAACAACTTCAACAACAGCCTGTTCCCGGCCTTG
CACGAAGGGCTGGCGCTGCTCGCCGAGAAGCTCTGA
Translation:
MTKRKLAYIWSLRNAAADKAGQYVPYKGEQRYMKSVLESLVEALNQTALGDAYELVGVIYDDDAELPRDQGK
IKDYGFAYRPGQQWFYPADLQVQGKTLNDLLLSVPSTYRRYPRGTPEHVAGKSDFERRLHDTLVELGADVVV
LDGLLVILDELVRPGAPFARRIMNIHPGVTREDSPYERRGAYATLDALYGARGEKVVDWATMEKVAVEPLYW
TGASFHYVDNGIDSGEVFHDVLKTEISPDDTILELRWNNFNNSLFPALHEGLALLAEKL*
AnnotationID:2777GeneID:2769
AnnotatorUID: diggins
Modification Date/Time: 2004-07-01 12:12:38
Gene Name:pvdF
Confidence Code:1
GeneProduct:pyoverdine synthetase F
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):secreted factors (toxins, enzymes, alginate)
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG33249.1| (AF013993) ornibactin synthetase F [Burkholderia cepacia]
          Length = 279

 Score =  347 bits (890), Expect = 4e-95
 Identities = 178/274 (64%), Positives = 206/274 (75%), Gaps = 1/274 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5541




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32946




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2769_cdd.html


    		




 
URL:

















    ReferenceID:34485




  
Author/Investigator(s):
        McMorran BJ, Kumara HM, Sullivan K, Lamont IL.





  
Title:
        Involvement of a transformylase enzyme in siderophore synthesis in Pseudomonas aeruginosa.




  
PubMed:
        11390682


MedLine:
        




    
Source:
Microbiology. 2001 Jun;147(Pt 6):1517-24.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11390682









           
Homologs By Global Alignment 

           

       



     
Gene ID:2769
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4509
                           PA2396_tr
                           translation of PA2396
                           275
                           99.99
                           99.99
                           0
                           1443.0
     

     
     
130089
                           gb|AAG05784.1|AE004665_11
                           (AE004665) pyoverdine synthetase F [Pseudomonas aeruginosa PAO1]
                           275
                           99.99
                           99.99
                           0
                           1443.0
     

     
     
130090
                           gb|AAB60201.1|
                           (U07359) pyoverdine synthetase F [Pseudomonas aeruginosa]
                           275
                           99.27
                           99.27
                           0
                           1430.0
     

     
     
130091
                           gb|AAO17437.1|
                           (AF540993) PA2396 [Pseudomonas aeruginosa]
                           275
                           86.90
                           93.81
                           0
                           1255.0
     

     
     
130092
                           gb|AAO17426.1|
                           (AF540992) PA2396 [Pseudomonas aeruginosa]
                           275
                           86.90
                           93.81
                           0
                           1255.0
     

     






      

          
GC ORFID: 45771How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2396Glimmer Score: 

          
Start: 1963180Stop: 1962353

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2396 translation of PA2396Homolog Bit Score 560.0

          
Other Homologs:  t_PA2396 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGAAAAGGAAACTGGCCTATATCTGGTCCCTGAGAAACGCCGCGGCCGACAAGGCCGGCCAGTACGTG 
CCGTACAAGGGCGAACAGCGGTACATGAAGTCGGTACTGGAGTCCTTGGTGGAGGCGCTGAACCAGACTGCG 
CTGGGCGATGCCTACGAGCTCGTGGGCGTGATCTACGACGACGACGCGGAGCTGCCTCGCGACCAGGGAAAA 
ATCAAGGATTACGGTTTCGCCTATCGTCCCGGGCAGCAATGGTTCTATCCGGCAGACCTGCAGGTGCAAGGC 
AAGACCCTGAACGACCTCTTGCTCAGCGTGCCGTCCACCTACCGCCGGTACCCGCGGGGTACCCCCGAGCAT 
GTGGCCGGCAAGAGCGATTTCGAGCGACGCCTGCATGACACCCTGGTGGAGCTGGGCGCCGATGTGGTGGTA 
TTGGACGGGCTCCTGGTCATCCTCGATGAGCTGGTACGCCCGGGCGCTCCGTTCGCACGGCGGATCATGAAT 
ATCCATCCTGGCGTGACGCGCGAGGACTCGCCTTACGAGCGTCGTGGCGCCTATGCGACCCTGGACGCGTTG 
TATGGAGCGCGGGGCGAGAAGGTGGTGGATTGGGCGACCATGGAAAAGGTCGCGGTCGAGCCGCTGTACTGG 
ACCGGAGCATCGTTCCACTATGTGGACAATGGCATCGATTCCGGCGAAGTGTTCCATGATGTGCTGAAAACG 
GAGATTTCACCCGACGACACCATCCTCGAGCTGCGCTGGAACAACTTCAACAACAGCCTGTTCCCGGCCTTG 
CACGAAGGGCTGGCGCTGCTCGCCGAGAAGCTCTGA