ViewGene
Locus Name:
GeneID:
Location:

GeneID:2768
TrivialName: PA14_44640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44640
PAO1 Ortholog Locus:PA1531
Sequence Length:867
Protein Length:288
Start: 3973631
Stop: 3974497
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04920.1|AE004581_7 (AE004581) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/288 (97%), Positives = 284/288 (98%)
Sequence:
ATGCTAGCGCAATTTACCCCTTCTGCGCTCGCTGACTTGGCAAACTGCGTGCTAAGAATTCCCCTGGCCCTT
CAGCAGCCCTCGTCGGTGGCAATGACTCTACCCTCCCTGACTTCGTTCATGCCTCATTTCGGCGCACCGGCG
CTGCTCCTGCTGCAGTTGCTCGCGGCCCTGCCAGCGACGGCCACGGAGAACGACGCGACGCCATTGCGCTTC
TCGGTGATGGAAAGCTGGAGCATGCCGTTGATCCGCCTGGAACGGGGCCAGCCGATCGACGGCATCGTCTAC
GACATCACCCGCTCCCTGGCCCGGCAGGTCGGCCGCAAGGCGCTCTACCACCCCTACCCGCGCGGGCGCATC
GAGCAGGCGATGAACGGCGCTGAAATCGATGTTCGCTGCTATATCAGCCCCGCCTGGCTCAGCCACGACTTC
CCCGGCTATCGCTGGAGCGTCGCGCTGCTGGTGCAACGCGACATCCTGGTCGCCCGCGAAGGCTTCGCGCCG
ATTCCCGAGGCGCTGCCGGCCCAGCGTATCGGTACCGTCCTCGGCTACAGCTATCCCCGCTTGCAAGCGCTG
TTCGACATCGGCCGGCTACGCCGCGACGATGCGCGCACCCAGGACCTGGTGCTGGAAAAGCTGCGCGCCGGC
CGCTACCGCTACGCGGTCAGCCATCAACTGTCGCTGCACTGGAGCAACCGCCAGGCGCCGGGGCAGCCGCCA
CTCCAGGAAGCCGCGCAGCTCGAGGAAACGGCAGTGAGCTGCCTGGTGCGGGATTCCGCGGAGGTTCCGGTG
GAAGCGATACTGAAGACGTTCGAGGAAATGAAGCGCAGCGGAGAGATCGAGGAGATACTGCAGCGCTACCGA
TAA
Translation:
MLAQFTPSALADLANCVLRIPLALQQPSSVAMTLPSLTSFMPHFGAPALLLLQLLAALPATATENDATPLRF
SVMESWSMPLIRLERGQPIDGIVYDITRSLARQVGRKALYHPYPRGRIEQAMNGAEIDVRCYISPAWLSHDF
PGYRWSVALLVQRDILVAREGFAPIPEALPAQRIGTVLGYSYPRLQALFDIGRLRRDDARTQDLVLEKLRAG
RYRYAVSHQLSLHWSNRQAPGQPPLQEAAQLEETAVSCLVRDSAEVPVEAILKTFEEMKRSGEIEEILQRYR
*
AnnotationID:2776GeneID:2768
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 08:08:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1531
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5539




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37296




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2768_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2768
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4508
                           PA1531_tr
                           translation of PA1531
                           288
                           97.56
                           98.61
                           0
                           1444.0
     

     
     
130086
                           gb|AAG04920.1|AE004581_7
                           (AE004581) hypothetical protein PA1531 [Pseudomonas aeruginosa PAO1]
                           288
                           97.56
                           98.61
                           0
                           1444.0
     

     
     
130088
                           gb|AAO57117.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           299
                           39.79
                           55.51
                           44
                           525.0
     

     
     
130087
                           gb|AAN69850.1|AE016624_1
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           318
                           38.05
                           52.51
                           80
                           600.0
     

     






      

          
GC ORFID: 45770How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1531Glimmer Score: 

          
Start: 980278Stop: 979412

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1531 translation of PA1531Homolog Bit Score 560.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene576 (ORF: BLASTX 196.0), t_PA1531 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTAGCGCAATTTACCCCTTCTGCGCTCGCTGACTTGGCAAACTGCGTGCTAAGAATTCCCCTGGCCCTT 
CAGCAGCCCTCGTCGGTGGCAATGACTCTACCCTCCCTGACTTCGTTCATGCCTCATTTCGGCGCACCGGCG 
CTGCTCCTGCTGCAGTTGCTCGCGGCCCTGCCAGCGACGGCCACGGAGAACGACGCGACGCCATTGCGCTTC 
TCGGTGATGGAAAGCTGGAGCATGCCGTTGATCCGCCTGGAACGGGGCCAGCCGATCGACGGCATCGTCTAC 
GACATCACCCGCTCCCTGGCCCGGCAGGTCGGCCGCAAGGCGCTCTACCACCCCTACCCGCGCGGGCGCATC 
GAGCAGGCGATGAACGGCGCTGAAATCGATGTTCGCTGCTATATCAGCCCCGCCTGGCTCAGCCACGACTTC 
CCCGGCTATCGCTGGAGCGTCGCGCTGCTGGTGCAACGCGACATCCTGGTCGCCCGCGAAGGCTTCGCGCCG 
ATTCCCGAGGCGCTGCCGGCCCAGCGTATCGGTACCGTCCTCGGCTACAGCTATCCCCGCTTGCAAGCGCTG 
TTCGACATCGGCCGGCTACGCCGCGACGATGCGCGCACCCAGGACCTGGTGCTGGAAAAGCTGCGCGCCGGC 
CGCTACCGCTACGCGGTCAGCCATCAACTGTCGCTGCACTGGAGCAACCGCCAGGCGCCGGGGCAGCCGCCA 
CTCCAGGAAGCCGCGCAGCTCGAGGAAACGGCAGTGAGCTGCCTGGTGCGGGATTCCGCGGAGGTTCCGGTG 
GAAGCGATACTGAAGACGTTCGAGGAAATGAAGCGCAGCGGAGAGATCGAGGAGATACTGCAGCGCTACCGA 
TAA