ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2767

TrivialName: PA14_48410

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48410

PAO1 Ortholog Locus: PA1227

Sequence Length: 849

Protein Length: 282

Start: 4305404

Stop: 4304556

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04616.1|AE004552_6 (AE004552) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 280/282 (99%), Positives = 280/282 (99%)

Sequence:

GTGGCGGCCTGTCCGGAGCTGGTGGACGCCACGTTCGCCATCCTGGCCTCGGGCTGGCATTCCACGGCGGTG
GAGGTCGGAGGGCGCTGGGTGTTCAAGTTTCCGCGCGGCGCGGAGGCCGAGGCGGCGCTGCTGCGCGAGGCC
GCCGTGCTACGCCTGGTGCGTCCGGCGGTGAGCCTGGCGGTGCCGGCGCCGCAGGTGTTTGCGGGACCGCCG
CTGTTTTCCCGCCACGAGAAACTGCCTGGCGGTTACCTCCTGGGCGAGGACTATCGGCGCCTGGACGAACCC
GCACGGCAGGCGGTCGGCGATGCGCTGGGGCGCTTCTACGCCGAGCTGCATCGACTGCCACCGGCGCGCATG
CGGGCGGTTGGAGCCTTGCCGGTGCGTCCCTGGGAGTCGCCCGCGGCGATGCGCAGGCACGCCTTGCCGCTG
CTGCCTGCGGCCTGGCGCGAACGCGCGGAACGCTTGGTGCGGGAATATGCCAAGCTGCCTGCCGATCCGCTG
GGTTCGATCTTCGGCTTCTTCGACGGCCATGGCTGGAACATGGCATTCGATAGCGAGGCCGGGCGGTTGAAC
GGTGTGTACGACTTCGCCGACGCGGGCATCGGTCCGCTGCACCAGGAATTCATCTATTCCGCGTTCATCGAT
GCCGACCTCACCGAGCGCATCGTCGCCGCCTACGAGCGCTTCAGCGGTCGGCGCCTGGAGCGTCGGCGGATC
GCCTTGCTGACGGCGGCGCATCGGCTGTCGGAGCTGGCCGAGCTGGCCGACGAGCCGCGCCATCTGCCGGAC
ATGCTCGCCGGCGCCCTCGACGGCCTGGCCCTGGCGGAGGCGCAGGGCCTGGCCTGA

Translation:

MAACPELVDATFAILASGWHSTAVEVGGRWVFKFPRGAEAEAALLREAAVLRLVRPAVSLAVPAPQVFAGPP
LFSRHEKLPGGYLLGEDYRRLDEPARQAVGDALGRFYAELHRLPPARMRAVGALPVRPWESPAAMRRHALPL
LPAAWRERAERLVREYAKLPADPLGSIFGFFDGHGWNMAFDSEAGRLNGVYDFADAGIGPLHQEFIYSAFID
ADLTERIVAAYERFSGRRLERRRIALLTAAHRLSELAELADEPRHLPDMLAGALDGLALAEAQGLA*

AnnotationID:2775 GeneID:2767

AnnotatorUID: diggins

Modification Date/Time: 2005-02-22 07:07:23

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1227

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:14667

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22681

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37534

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2767_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2767

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4507 PA1227_tr translation of PA1227 282 99.29 99.29 0 1444.0

130085 gb|AAG04616.1|AE004552_6 (AE004552) hypothetical protein PA1227 [Pseudomonas aeruginosa PAO1] 282 98.93 99.29 0 1441.0

GC ORFID: `45769`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1227`	Glimmer Score:
Start: `648504`	Stop: `649352`
Length: `849`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1227 translation of PA1227`	Homolog Bit Score `560.0`
Other Homologs: `t_PA1227 (ORF: GLIMMER)`
GC ORF Sequence
GTGGCGGCCTGTCCGGAGCTGGTGGACGCCACGTTCGCCATCCTGGCCTCGGGCTGGCATTCCACGGCGGTG GAGGTCGGAGGGCGCTGGGTGTTCAAGTTTCCGCGCGGCGCGGAGGCCGAGGCGGCGCTGCTGCGCGAGGCC GCCGTGCTACGCCTGGTGCGTCCGGCGGTGAGCCTGGCGGTGCCGGCGCCGCAGGTGTTTGCGGGACCGCCG CTGTTTTCCCGCCACGAGAAACTGCCTGGCGGTTACCTCCTGGGCGAGGACTATCGGCGCCTGGACGAACCC GCACGGCAGGCGGTCGGCGATGCGCTGGGGCGCTTCTACGCCGAGCTGCATCGACTGCCACCGGCGCGCATG CGGGCGGTTGGAGCCTTGCCGGTGCGTCCCTGGGAGTCGCCCGCGGCGATGCGCAGGCACGCCTTGCCGCTG CTGCCTGCGGCCTGGCGCGAACGCGCGGAACGCTTGGTGCGGGAATATGCCAAGCTGCCTGCCGATCCGCTG GGTTCGATCTTCGGCTTCTTCGACGGCCATGGCTGGAACATGGCATTCGATAGCGAGGCCGGGCGGTTGAAC GGTGTGTACGACTTCGCCGACGCGGGCATCGGTCCGCTGCACCAGGAATTCATCTATTCCGCGTTCATCGAT GCCGACCTCACCGAGCGCATCGTCGCCGCCTACGAGCGCTTCAGCGGTCGGCGCCTGGAGCGTCGGCGGATC GCCTTGCTGACGGCGGCGCATCGGCTGTCGGAGCTGGCCGAGCTGGCCGACGAGCCGCGCCATCTGCCGGAC ATGCTCGCCGGCGCCCTCGACGGCCTGGCCCTGGCGGAGGCGCAGGGCCTGGCCTGA