ViewGene
Locus Name:
GeneID:
Location:

GeneID:2766
TrivialName: PA14_53720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53720
PAO1 Ortholog Locus:PA0816
Sequence Length:885
Protein Length:294
Start: 4762535
Stop: 4763419
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04205.1|AE004516_10 (AE004516) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 293/294 (99%), Positives = 294/294 (100%)
Sequence:
ATGATCCGCGAACTCCGCACCCTGGTCGCCGTGGCGCGCCGGGGCTCCTTCGCCGCGGCGGGGGAACAGGTG
GGGCTGACGCAGTCGGCGGTGAGCGCGCAGATACGCGCGCTGGAACGCAGCGTCGGCGTCGAGTTGTTCAAG
CGCACGCCGCGCGCGGCGCACCTGAACGAGGCCGGGCGGCAGGCGGTGCGTACGGCCGAGCAGATCCTCGCG
CTGTTCGACGGCATCGGCCAGGGCGACAGCCCGCGCGGACGCCTGCGCATCGGTGCGGTGAACACGGCGCAG
ACCGGGCTGCTGCCGGAGGTGCTCAAGCGCCTCGCCGAACAGGCGCCGCACATCGAGCCGCAGGTGGTGCCG
GGCGTCTCGCTACACCTGCTGGACCAGGTGGACGCCGCCGAACTGGACCTGGCGATCCTCATCCGCCCGCCG
TTCAACCTGCCGCGCGGGCTCTCTGCGCAACGGGTCGAGCGCCAGCCGTTCGTGCTGATCGCGCCGCCGCAA
TGCACCGCGACGGATGCGCTGGAATTGCTGCGCACGCAACCGTTCATCCGCTACGACCATGTGTCCTTCGGC
GGTCGCCTGGTGGGCGATTTCCTCGAGGCGCAGCAGCTCAGGCCGCGCCAGGTGATGGAGCTGGACGAGATC
GACGCGATCGCGCGGATGGTGGAGAACGGTCTCGGCGTGGCGCTGCTGCCCCGGGCCGGGCTGTGGCTACGC
GAGCCGGCGCGGGTACGGGTGATCGAACTGGGCGCGCTGGAATTCCAGCGCGAGCTGGTGATGGTCAGCCGC
AGCGGTTCGGCGCAGGACGACCTGGTCGGTGAATTCCGCCGCGCCCTGCTGGCCGAGACGGCGGCTCAGGAG
GCCGCGCCGACCACCGCGTAG
Translation:
MIRELRTLVAVARRGSFAAAGEQVGLTQSAVSAQIRALERSVGVELFKRTPRAAHLNEAGRQAVRTAEQILA
LFDGIGQGDSPRGRLRIGAVNTAQTGLLPEVLKRLAEQAPHIEPQVVPGVSLHLLDQVDAAELDLAILIRPP
FNLPRGLSAQRVERQPFVLIAPPQCTATDALELLRTQPFIRYDHVSFGGRLVGDFLEAQQLRPRQVMELDEI
DAIARMVENGLGVALLPRAGLWLREPARVRVIELGALEFQRELVMVSRSGSAQDDLVGEFRRALLAETAAQE
AAPTTA*
AnnotationID:2774GeneID:2766
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 17:05:20
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:(1) Cytoplasmic
Synonyms:PA0816
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
         CD-Length = 297 residues,  99.7% aligned
         Score =  122 bits (305), Expect = 2e-28






   
Genomic Context:






   
Comment:


















    ReferenceID:5535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22679




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2766
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4506
                           PA0816_tr
                           translation of PA0816
                           294
                           99.65
                           99.99
                           0
                           1443.0
     

     
     
130076
                           gb|AAG04205.1|AE004516_10
                           (AE004516) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           294
                           99.65
                           99.99
                           0
                           1443.0
     

     
     
130078
                           emb|CAE34838.1|
                           (BX640450) LysR family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           304
                           45.39
                           58.88
                           23
                           581.0
     

     
     
130079
                           emb|CAE39285.1|
                           (BX640435) LysR family transcriptional regulator [Bordetella parapertussis]
                           304
                           45.39
                           58.88
                           23
                           581.0
     

     
     
130081
                           gb|AAC46260.1|
                           (AF006000) Brg1 [Bordetella pertussis]
                           304
                           45.06
                           58.55
                           23
                           573.0
     

     






      

          
GC ORFID: 45768How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0816Glimmer Score: 

          
Start: 191372Stop: 190488

          
Length: 885


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0816 translation of PA0816Homolog Bit Score 560.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7159 (ORF: BLASTX 214.0), t_PA0816 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCGCGAACTCCGCACCCTGGTCGCCGTGGCGCGCCGGGGCTCCTTCGCCGCGGCGGGGGAACAGGTG 
GGGCTGACGCAGTCGGCGGTGAGCGCGCAGATACGCGCGCTGGAACGCAGCGTCGGCGTCGAGTTGTTCAAG 
CGCACGCCGCGCGCGGCGCACCTGAACGAGGCCGGGCGGCAGGCGGTGCGTACGGCCGAGCAGATCCTCGCG 
CTGTTCGACGGCATCGGCCAGGGCGACAGCCCGCGCGGACGCCTGCGCATCGGTGCGGTGAACACGGCGCAG 
ACCGGGCTGCTGCCGGAGGTGCTCAAGCGCCTCGCCGAACAGGCGCCGCACATCGAGCCGCAGGTGGTGCCG 
GGCGTCTCGCTACACCTGCTGGACCAGGTGGACGCCGCCGAACTGGACCTGGCGATCCTCATCCGCCCGCCG 
TTCAACCTGCCGCGCGGGCTCTCTGCGCAACGGGTCGAGCGCCAGCCGTTCGTGCTGATCGCGCCGCCGCAA 
TGCACCGCGACGGATGCGCTGGAATTGCTGCGCACGCAACCGTTCATCCGCTACGACCATGTGTCCTTCGGC 
GGTCGCCTGGTGGGCGATTTCCTCGAGGCGCAGCAGCTCAGGCCGCGCCAGGTGATGGAGCTGGACGAGATC 
GACGCGATCGCGCGGATGGTGGAGAACGGTCTCGGCGTGGCGCTGCTGCCCCGGGCCGGGCTGTGGCTACGC 
GAGCCGGCGCGGGTACGGGTGATCGAACTGGGCGCGCTGGAATTCCAGCGCGAGCTGGTGATGGTCAGCCGC 
AGCGGTTCGGCGCAGGACGACCTGGTCGGTGAATTCCGCCGCGCCCTGCTGGCCGAGACGGCGGCTCAGGAG 
GCCGCGCCGACCACCGCGTAG