ViewGene

Locus Name:
GeneID:
Location:

GeneID:2764
TrivialName: PA14_09420
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09420
PAO1 Ortholog Locus:PA4215
Sequence Length:837
Protein Length:278
Start: 808362
Stop: 807526
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07602.1|AE004838_6 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGCACAGATATGTCGTGATAGACGCCTTCGCCAGCGAACCGCTGCAAGGCAACCCGGTGGCGGTGTTCTTC
GACTGCGACGACCTCAGCGGCGAGCGCATGCAGCGCATGGCGCGGGAGATGAACCTGTCGGAGAGCACCTTC
GTGCTCCGCCCGCAACAGGACGGCGACGCGCGCATCCGCATCTTCACCCCGGTCAACGAACTGCCGTTCGCC
GGCCACCCGCTGCTGGGCACCGCCATCGCCCTGGGCGCCGAGACCGACAAGGACAGGCTGTTCCTGGAGACC
AGGATGGGCACCGTGCCCTTCGCCCTGGAGCGCCAGGACGGCAAGGTGGTGGCCTGCAGCATGCAGCAGCCG
ATCCCCACCTGGGAGCACTTCAGCCGACCGGCCGAGCTGCTCGCCGCCCTCGGCCTGAAGGGCTCGACCTTT
CCCATCGAGGTCTACCGCAACGGCCCGCGCCACGTGTTCGTCGGCCTGGAGAGCGTCGCCGCGCTGTCCGCG
CTGCACCCCGACCACCGCGCGCTGTGCGACTTCCCGGACCTGGCGGTGAACTGCTTCGCCGGCGCCGGGCGG
CACTGGCGCAGCCGCATGTTCTCGCCGGCCTACGGCGTGGTCGAGGACGCCGCCACCGGCTCCGCCGCCGGG
CCGCTGGCGATCCACCTGGCGCGCCACCGGCAGATTCCCTACGGGCAGCAGATCGAGATCCTCCAGGGCGTC
GAGATCGGCCGGCCGTCGCGCATGTACGCCCGCGCCGAGGGCGCCGGCGAGCGGGTCTCGGCGGTGGAAGTG
TCGGGCAACGGCGCGGCCTTCGCCGAAGGCCGGGCCTACCTGTGA
Translation:
MHRYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNELPFA
GHPLLGTAIALGAETDKDRLFLETRMGTVPFALERQDGKVVACSMQQPIPTWEHFSRPAELLAALGLKGSTF
PIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVNCFAGAGRHWRSRMFSPAYGVVEDAATGSAAG
PLAIHLARHRQIPYGQQIEILQGVEIGRPSRMYARAEGAGERVSAVEVSGNGAAFAEGRAYL*
AnnotationID:2772GeneID:2764
AnnotatorUID: danlee
Modification Date/Time: 2003-11-12 16:04:09
Gene Name:phzF1
Confidence Code:1
GeneProduct:probable phenazine biosynthesis protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis.
Homology:
corresponds to PA4215 of PAO1 (based on sequence and genomic context).
Structural Features:
Genomic Context:
Operon phzA1B1C1D1E1F1G1
Comment:
ReferenceID:5531
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22675
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2764

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4503 PA4215_tr translation of PA4215 278 99.99 99.99 0 1446.0
4504 PA1904_tr translation of PA1904 278 99.99 99.99 0 1446.0
129994 gb|AAG07602.1|AE004838_6 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 278 99.99 99.99 0 1446.0
129995 gb|AAG05293.1|AE004616_7 (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1] 278 99.99 99.99 0 1446.0
129996 gb|AAC64492.1| (AF005404) PhzF [Pseudomonas aeruginosa] 278 99.99 99.99 0 1446.0
GC ORFID: 45766How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4215Glimmer Score:
Start: 4145575Stop: 4146411
Length: 837
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4215 translation of PA4215Homolog Bit Score 561.0
Other Homologs: t_PA1904 (ORF: BLASTX 561.0), t_PA4215 (ORF: GLIMMER)
GC ORF Sequence
ATGCACAGATATGTCGTGATAGACGCCTTCGCCAGCGAACCGCTGCAAGGCAACCCGGTGGCGGTGTTCTTC
GACTGCGACGACCTCAGCGGCGAGCGCATGCAGCGCATGGCGCGGGAGATGAACCTGTCGGAGAGCACCTTC
GTGCTCCGCCCGCAACAGGACGGCGACGCGCGCATCCGCATCTTCACCCCGGTCAACGAACTGCCGTTCGCC
GGCCACCCGCTGCTGGGCACCGCCATCGCCCTGGGCGCCGAGACCGACAAGGACAGGCTGTTCCTGGAGACC
AGGATGGGCACCGTGCCCTTCGCCCTGGAGCGCCAGGACGGCAAGGTGGTGGCCTGCAGCATGCAGCAGCCG
ATCCCCACCTGGGAGCACTTCAGCCGACCGGCCGAGCTGCTCGCCGCCCTCGGCCTGAAGGGCTCGACCTTT
CCCATCGAGGTCTACCGCAACGGCCCGCGCCACGTGTTCGTCGGCCTGGAGAGCGTCGCCGCGCTGTCCGCG
CTGCACCCCGACCACCGCGCGCTGTGCGACTTCCCGGACCTGGCGGTGAACTGCTTCGCCGGCGCCGGGCGG
CACTGGCGCAGCCGCATGTTCTCGCCGGCCTACGGCGTGGTCGAGGACGCCGCCACCGGCTCCGCCGCCGGG
CCGCTGGCGATCCACCTGGCGCGCCACCGGCAGATTCCCTACGGGCAGCAGATCGAGATCCTCCAGGGCGTC
GAGATCGGCCGGCCGTCGCGCATGTACGCCCGCGCCGAGGGCGCCGGCGAGCGGGTCTCGGCGGTGGAAGTG
TCGGGCAACGGCGCGGCCTTCGCCGAAGGCCGGGCCTACCTGTGA