ViewGene

Locus Name:
GeneID:
Location:

GeneID:2763
TrivialName: PA14_27280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27280
PAO1 Ortholog Locus:PA2846
Sequence Length:855
Protein Length:284
Start: 2368733
Stop: 2367879
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06234.1|AE004711_6 (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 284/284 (100%), Positives = 284/284 (100%)
Sequence:
ATGAGCTACCAGCCCGGCATCGATACGGAATTGCTCCGCACCTTCGTCGCCATCGCCGAGCACGGTGGTTTC
ACCCGCGCCGCGGAGGCGCTGAATCGCACCCAGTCGGCGGTCAGCATGCAGATGAAGCGGCTAGAGGAGGAC
GTCCTGCAGCGCTCGCTGTTCGAGCGCGACGGAAGGCAGACCCGCCTCACCGCCGAAGGCCAGGTGCTGCTC
GGCTATGCCCGGCGGATCCTCAAGCTGCACGGCGAGGTGTTCAACACCCTGCGCCGCCCGCACATGGTCGGC
TCGGTGCGCATCGGCACCCCGGACGACTACGTGATGCGCTTCCTCCCGGCGATCCTGTCGCGCTTCGCCGAA
GCCTATCCGCTGGTGCAGGTCGAGGTGCATTGCGACACCTCGCTCAACCTGCTGGCGCGCAACGACCTCGAC
CTGTCCATCGTCACCCGTGAGCCGGGCACCGAGATCGGCCAGTTGCTGCGCCAGGAGCCCTTCGTCTGGATG
GCCGCCGAGGGCTTCTGCCCCCACGACCAGCGGCCGATCCCGCTGGCCATGTTCAACACCACCTGCTTTTGC
CGGGCCTGGGCCTGCAACGCCCTGGAGGCGGCGGAACTGGACTACCGCATCGCCTACAGCAGCCCCAGCCTG
TCGGCGCTGTTCGCGGTGGTCAGCGCCGGCCTCGCCGTGACCGTGCAACTGCGTAGCCTGCTCACCGGCAAC
CTGCGCATCCTCGACGAGAGCGAGGGCCTGCCCGCCCTGCCCTCGGCCAGCATCATGCTGATGCGCAACCCG
CACAGCCAGTCGCCGGTCACCGAGAAGCTCGCCGAATACATCGGCGAGGGCTTCCGTCTCTGA
Translation:
MSYQPGIDTELLRTFVAIAEHGGFTRAAEALNRTQSAVSMQMKRLEEDVLQRSLFERDGRQTRLTAEGQVLL
GYARRILKLHGEVFNTLRRPHMVGSVRIGTPDDYVMRFLPAILSRFAEAYPLVQVEVHCDTSLNLLARNDLD
LSIVTREPGTEIGQLLRQEPFVWMAAEGFCPHDQRPIPLAMFNTTCFCRAWACNALEAAELDYRIAYSSPSL
SALFAVVSAGLAVTVQLRSLLTGNLRILDESEGLPALPSASIMLMRNPHSQSPVTEKLAEYIGEGFRL*
AnnotationID:2771GeneID:2763
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:PA2846
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466,pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67482.1|AE016374_14 (AE016780) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 283

 Score =  441 bits (1134), Expect = e-123
 Identities = 214/283 (75%), Positives = 246/283 (86%)

>gb|AAO55290.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 284

 Score =  415 bits (1067), Expect = e-115
 Identities = 206/283 (72%), Positives = 241/283 (85%)

Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription] 
CD-Length = 297 residues,  98.3% aligned
Score =  128 bits (322), Expect = 6e-31
Identities = 98/295 (33%), Positives = 128/295 (43%), Gaps = 21/295 (7%)

pfam03466, LysR_substrate, LysR substrate binding domain
CD-Length = 209 residues,  97.6% aligned
Score = 88.9 bits (220), Expect = 7e-19
Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 20/206 (9%)

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues,  98.3% aligned
Score = 74.8 bits (184), Expect = 1e-14
Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Genomic Context:
Comment:
ReferenceID:5529
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22673
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36182
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2763_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2763

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4502 PA2846_tr translation of PA2846 284 99.99 99.99 0 1447.0
129982 gb|AAG06234.1|AE004711_6 (AE004711) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 284 99.99 99.99 0 1447.0
129983 gb|AAN67482.1|AE016374_14 (AE016780) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 284 75.35 86.61 1 1134.0
129984 gb|AAO55290.1| (AE016862) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000] 284 72.53 84.85 0 1064.0
129989 dbj|BAB49804.1| (AP003000) transcriptional regulator [Mesorhizobium loti] 289 42.21 56.74 9 521.0
GC ORFID: 45765How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2846Glimmer Score:
Start: 2585194Stop: 2586048
Length: 855
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2846 translation of PA2846Homolog Bit Score 561.0
Other Homologs: t_PA2846 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCTACCAGCCCGGCATCGATACGGAATTGCTCCGCACCTTCGTCGCCATCGCCGAGCACGGTGGTTTC
ACCCGCGCCGCGGAGGCGCTGAATCGCACCCAGTCGGCGGTCAGCATGCAGATGAAGCGGCTAGAGGAGGAC
GTCCTGCAGCGCTCGCTGTTCGAGCGCGACGGAAGGCAGACCCGCCTCACCGCCGAAGGCCAGGTGCTGCTC
GGCTATGCCCGGCGGATCCTCAAGCTGCACGGCGAGGTGTTCAACACCCTGCGCCGCCCGCACATGGTCGGC
TCGGTGCGCATCGGCACCCCGGACGACTACGTGATGCGCTTCCTCCCGGCGATCCTGTCGCGCTTCGCCGAA
GCCTATCCGCTGGTGCAGGTCGAGGTGCATTGCGACACCTCGCTCAACCTGCTGGCGCGCAACGACCTCGAC
CTGTCCATCGTCACCCGTGAGCCGGGCACCGAGATCGGCCAGTTGCTGCGCCAGGAGCCCTTCGTCTGGATG
GCCGCCGAGGGCTTCTGCCCCCACGACCAGCGGCCGATCCCGCTGGCCATGTTCAACACCACCTGCTTTTGC
CGGGCCTGGGCCTGCAACGCCCTGGAGGCGGCGGAACTGGACTACCGCATCGCCTACAGCAGCCCCAGCCTG
TCGGCGCTGTTCGCGGTGGTCAGCGCCGGCCTCGCCGTGACCGTGCAACTGCGTAGCCTGCTCACCGGCAAC
CTGCGCATCCTCGACGAGAGCGAGGGCCTGCCCGCCCTGCCCTCGGCCAGCATCATGCTGATGCGCAACCCG
CACAGCCAGTCGCCGGTCACCGAGAAGCTCGCCGAATACATCGGCGAGGGCTTCCGTCTCTGA