ViewGene
Locus Name:
GeneID:
Location:

GeneID:2762
TrivialName: PA14_39890
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39890
PAO1 Ortholog Locus:PA1904
Sequence Length:837
Protein Length:278
Start: 3556965
Stop: 3556129
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07602.1|AE004838_6 (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGCACAGATATGTCGTGATAGACGCCTTCGCCAGCGAACCGCTGCAAGGCAACCCGGTGGCGGTGTTCTTC
GACTGCGACGACCTCAGCGGCGAGCGCATGCAGCGCATGGCGCGGGAGATGAACCTGTCGGAGAGCACCTTC
GTGCTCCGCCCGCAACAGGACGGCGACGCGCGCATCCGCATCTTCACCCCGGTCAACGAACTGCCGTTCGCC
GGCCACCCGCTGCTGGGCACCGCCATCGCCCTGGGCGCCGAGACCGACAAGGACAGGCTGTTCCTGGAGACC
AGGATGGGCACCGTGCCCTTCGCCCTGGAGCGCCAGGACGGCAAGGTGGTGGCCTGCAGCATGCAGCAGCCG
ATCCCCACCTGGGAGCACTTCAGCCGACCGGCCGAGCTGCTCGCCGCCCTCGGCCTGAAGGGCTCGACCTTT
CCCATCGAGGTCTACCGCAACGGCCCGCGCCACGTGTTCGTCGGCCTGGAGAGCGTCGCCGCGCTGTCCGCG
CTGCACCCCGACCACCGCGCGCTGTGCGACTTCCCGGACCTGGCGGTGAACTGCTTCGCCGGCGCCGGGCGG
CACTGGCGCAGCCGCATGTTCTCGCCGGCCTACGGCGTGGTCGAGGACGCCGCCACCGGCTCCGCCGCCGGG
CCGCTGGCGATCCACCTGGCGCGCCACCGGCAGATTCCCTACGGGCAGCAGATCGAGATCCTCCAGGGCGTC
GAGATCGGCCGGCCGTCGCGCATGTACGCCCGCGCCGAGGGCGCCGGCGAGCGGGTCTCGGCGGTGGAAGTG
TCGGGCAACGGCGCGGCCTTCGCCGAAGGCCGGGCCTACCTGTGA
Translation:
MHRYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNELPFA
GHPLLGTAIALGAETDKDRLFLETRMGTVPFALERQDGKVVACSMQQPIPTWEHFSRPAELLAALGLKGSTF
PIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVNCFAGAGRHWRSRMFSPAYGVVEDAATGSAAG
PLAIHLARHRQIPYGQQIEILQGVEIGRPSRMYARAEGAGERVSAVEVSGNGAAFAEGRAYL*
AnnotationID:2770GeneID:2762
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 14:02:17
Gene Name:phzF2
Confidence Code:1
GeneProduct:probable phenazine biosynthesis protein
Cell Localization:()
Synonyms:PA1904
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis
Homology:
corresponds to PA1904 of PAO1 (based on sequence and genomic context).
Structural Features:






   
Genomic Context:
Operon phzA2B2C2D2E2F2G2






   
Comment:


















    ReferenceID:5527




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22671




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2762
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4500
                           PA4215_tr
                           translation of PA4215
                           278
                           99.99
                           99.99
                           0
                           1446.0
     

     
     
4501
                           PA1904_tr
                           translation of PA1904
                           278
                           99.99
                           99.99
                           0
                           1446.0
     

     
     
129975
                           gb|AAG07602.1|AE004838_6
                           (AE004838) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1446.0
     

     
     
129976
                           gb|AAG05293.1|AE004616_7
                           (AE004616) probable phenazine biosynthesis protein [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1446.0
     

     
     
129977
                           gb|AAC64492.1|
                           (AF005404) PhzF [Pseudomonas aeruginosa]
                           278
                           99.99
                           99.99
                           0
                           1446.0
     

     






      

          
GC ORFID: 45764How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4215Glimmer Score: 

          
Start: 1396946Stop: 1397782

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4215 translation of PA4215Homolog Bit Score 561.0

          
Other Homologs:  t_PA1904 (ORF: BLASTX 561.0), t_PA4215 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAGATATGTCGTGATAGACGCCTTCGCCAGCGAACCGCTGCAAGGCAACCCGGTGGCGGTGTTCTTC 
GACTGCGACGACCTCAGCGGCGAGCGCATGCAGCGCATGGCGCGGGAGATGAACCTGTCGGAGAGCACCTTC 
GTGCTCCGCCCGCAACAGGACGGCGACGCGCGCATCCGCATCTTCACCCCGGTCAACGAACTGCCGTTCGCC 
GGCCACCCGCTGCTGGGCACCGCCATCGCCCTGGGCGCCGAGACCGACAAGGACAGGCTGTTCCTGGAGACC 
AGGATGGGCACCGTGCCCTTCGCCCTGGAGCGCCAGGACGGCAAGGTGGTGGCCTGCAGCATGCAGCAGCCG 
ATCCCCACCTGGGAGCACTTCAGCCGACCGGCCGAGCTGCTCGCCGCCCTCGGCCTGAAGGGCTCGACCTTT 
CCCATCGAGGTCTACCGCAACGGCCCGCGCCACGTGTTCGTCGGCCTGGAGAGCGTCGCCGCGCTGTCCGCG 
CTGCACCCCGACCACCGCGCGCTGTGCGACTTCCCGGACCTGGCGGTGAACTGCTTCGCCGGCGCCGGGCGG 
CACTGGCGCAGCCGCATGTTCTCGCCGGCCTACGGCGTGGTCGAGGACGCCGCCACCGGCTCCGCCGCCGGG 
CCGCTGGCGATCCACCTGGCGCGCCACCGGCAGATTCCCTACGGGCAGCAGATCGAGATCCTCCAGGGCGTC 
GAGATCGGCCGGCCGTCGCGCATGTACGCCCGCGCCGAGGGCGCCGGCGAGCGGGTCTCGGCGGTGGAAGTG 
TCGGGCAACGGCGCGGCCTTCGCCGAAGGCCGGGCCTACCTGTGA