ViewGene

Locus Name:
GeneID:
Location:

GeneID:2761
TrivialName: PA14_03960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03960
PAO1 Ortholog Locus:PA0304
Sequence Length:870
Protein Length:289
Start: 357381
Stop: 358250
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03693.1|AE004468_5 (AE004468) polyamine transport protein PotI [Pseudomonas aeruginosa PAO1]
Identities = 288/289 (99%), Positives = 288/289 (99%)
Sequence:
ATGAAGCGCTGGAATTTCTCCAACGTCATGCTGATCGTCGGCCTGCTCTTCATCTACCTGCCGATGCTGATC
CTGGTGATCTATTCGTTCAACGCCTCCAAGCTGGTGACGGTGTGGGGCGGCTGGTCGGTGAAGTGGTACGTC
GGCCTGCTGGACAACACCCAACTGGTCAGTTCGGTCGGCCGCTCCCTGGAGATCGCCTTCTATACGGCGTTC
TCCTCGGTGCTCCTCGGCACCCTGGCGGCCTTCGTCCTCACCCGCATCCCGCGCTTCCGCGGTCGTACGCTG
TTCGGCGGCATGGTCACCGCGCCGCTGGTGATGCCGGAAGTGATCACCGGCCTGTCGCTGCTGCTGTTGTTC
GTGGCCATGGCGCAACTGATCGGCTGGCCGCAGGAACGGGGTATCGTGACCATCTGGATCGCCCACACCAGC
TTCTGCTCGTCCTACGTGGCGGTGGTGGTGTCGGCGCGCCTGCGTGAACTCGACCTGTCGATCGAGGAAGCG
GCGATGGACCTGGGCGCCAAGCCCTGGAAGGTGTTCCTGCTGATCACCATCCCGATGATCGCGCCCTCGCTG
GCGGCGGGCGGCATGATGTCCTTCGCCCTGTCGCTGGACGACCTGGTACTGGCCAGCTTCGTCTCCGGACCC
GGCTCGACCACCTTGCCGATGGAAGTGTTCTCGGCGGTACGCCTGGGCGTGAAGCCGGAGATCAACGCGGTG
GCCAGCCTGATCCTGCTGAGCGTTTCGCTGTTCACCTTCTTCGCCTGGTACTTCACCCGCCAGGCCGAGGAG
CGGCGTCGCCGGGCGATCCAGCAGGCGATGGAAGAGACCGCGACCGACTGGCAGAAAGGCTCGCCGACCCCG
GCCTGA
Translation:
MKRWNFSNVMLIVGLLFIYLPMLILVIYSFNASKLVTVWGGWSVKWYVGLLDNTQLVSSVGRSLEIAFYTAF
SSVLLGTLAAFVLTRIPRFRGRTLFGGMVTAPLVMPEVITGLSLLLLFVAMAQLIGWPQERGIVTIWIAHTS
FCSSYVAVVVSARLRELDLSIEEAAMDLGAKPWKVFLLITIPMIAPSLAAGGMMSFALSLDDLVLASFVSGP
GSTTLPMEVFSAVRLGVKPEINAVASLILLSVSLFTFFAWYFTRQAEERRRRAIQQAMEETATDWQKGSPTP
A*
AnnotationID:2769GeneID:2761
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 07:07:22
Gene Name:spuH
Confidence Code:1
GeneProduct: polyamine transport protein PotI
Cell Localization:()
Synonyms:potI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putrescine ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:COG1177
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70742.1|AE016718_1 (AE016793) putrescine ABC transporter, permease protein
           [Pseudomonas putida KT2440]
          Length = 297

 Score =  487 bits (1253), Expect = e-137
 Identities = 247/278 (88%), Positives = 267/278 (96%)

>gb|AAO58727.1| (AE016875) putrescine ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 293

 Score =  474 bits (1220), Expect = e-133
 Identities = 241/290 (83%), Positives = 266/290 (91%), Gaps = 1/290 (0%)

>gb|AAN54341.1|AE015571_4 (AE015571) polyamine ABC transporter, permease protein [Shewanella
           oneidensis MR-1]
          Length = 271

 Score =  358 bits (918), Expect = 3e-98
 Identities = 177/267 (66%), Positives = 221/267 (82%)

Structural Features:
COG1177, PotC, ABC-type spermidine/putrescine transport system, 
permease component II 
[Amino acid transport and metabolism]
CD-Length = 267 residues,  97.4% aligned
Score =  220 bits (561), Expect = 2e-58
Identities = 117/268 (43%), Positives = 176/268 (65%), Gaps = 8/268 (2%)
Genomic Context:
Comment:
ReferenceID:5525
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22669
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35427
Author/Investigator(s): Lu CD, Itoh Y, Nakada Y, Jiang Y.
Title: Functional analysis and regulation of the divergent spuABCDEFGH-spuI operons for polyamine uptake and utilization in Pseudomonas aeruginosa PAO1.
PubMed: 12081945
MedLine:
Source:
J Bacteriol. 2002 Jul;184(14):3765-73.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12081945
ReferenceID:38072
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2761_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2761

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4497 PA0304_tr translation of PA0304 289 99.65 99.65 0 1448.0
129935 gb|AAG03693.1|AE004468_5 (AE004468) polyamine transport protein PotI [Pseudomonas aeruginosa PAO1] 289 99.65 99.65 0 1448.0
129936 gb|AAN70742.1|AE016718_1 (AE016793) putrescine ABC transporter, permease protein [Pseudomonas putida KT2440] 297 84.17 90.90 8 1248.0
129937 gb|AAO58727.1| (AE016875) putrescine ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 293 82.25 90.78 4 1222.0
129938 gb|AAK15491.1|AF323694_6 (AF323694) PotI [Pseudomonas fluorescens] 295 77.96 84.74 27 1153.0
GC ORFID: 45763How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0304Glimmer Score:
Start: 6158723Stop: 6159592
Length: 870
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0304 translation of PA0304Homolog Bit Score 562.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6515 (ORF: BLASTX 477.0), t_PA0304 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGCGCTGGAATTTCTCCAACGTCATGCTGATCGTCGGCCTGCTCTTCATCTACCTGCCGATGCTGATC
CTGGTGATCTATTCGTTCAACGCCTCCAAGCTGGTGACGGTGTGGGGCGGCTGGTCGGTGAAGTGGTACGTC
GGCCTGCTGGACAACACCCAACTGGTCAGTTCGGTCGGCCGCTCCCTGGAGATCGCCTTCTATACGGCGTTC
TCCTCGGTGCTCCTCGGCACCCTGGCGGCCTTCGTCCTCACCCGCATCCCGCGCTTCCGCGGTCGTACGCTG
TTCGGCGGCATGGTCACCGCGCCGCTGGTGATGCCGGAAGTGATCACCGGCCTGTCGCTGCTGCTGTTGTTC
GTGGCCATGGCGCAACTGATCGGCTGGCCGCAGGAACGGGGTATCGTGACCATCTGGATCGCCCACACCAGC
TTCTGCTCGTCCTACGTGGCGGTGGTGGTGTCGGCGCGCCTGCGTGAACTCGACCTGTCGATCGAGGAAGCG
GCGATGGACCTGGGCGCCAAGCCCTGGAAGGTGTTCCTGCTGATCACCATCCCGATGATCGCGCCCTCGCTG
GCGGCGGGCGGCATGATGTCCTTCGCCCTGTCGCTGGACGACCTGGTACTGGCCAGCTTCGTCTCCGGACCC
GGCTCGACCACCTTGCCGATGGAAGTGTTCTCGGCGGTACGCCTGGGCGTGAAGCCGGAGATCAACGCGGTG
GCCAGCCTGATCCTGCTGAGCGTTTCGCTGTTCACCTTCTTCGCCTGGTACTTCACCCGCCAGGCCGAGGAG
CGGCGTCGCCGGGCGATCCAGCAGGCGATGGAAGAGACCGCGACCGACTGGCAGAAAGGCTCGCCGACCCCG
GCCTGA