ViewGene
Locus Name:
GeneID:
Location:

GeneID:2759
TrivialName: PA14_62410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62410
PAO1 Ortholog Locus:PA4716
Sequence Length:855
Protein Length:284
Start: 5567101
Stop: 5567955
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08102.1|AE004885_7 (AE004885) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/284 (98%), Positives = 282/284 (99%)
Sequence:
ATGTCCCGACGCTACTGGCAACTCGATGTGTTCGCCGAGCGTCCGCTCACCGGCAACGGCCTGGCCGTATTC
GACGACGCCAGCACCCTCGATGACGCCGCCATGCAGGCCTGGACCCGCGAACTGCGCCAGTTCGAATCGATC
TTCCTGCTGCCGGGCGACGACCCACGGGCCTTCGGCGCACGGATCTTCACCCTGGAGGAAGAACTGCCGTTC
GCCGGCCACCCGCTGCTCGGCGCCGCCGCCCTGCTCCATCACCTGCGCGGCGGCGACAACGAACAGCACTGG
ACGCTGCACCTGGCCAGCAAATCGGTGGCCCTGCGCAGCGTGCGGGCGGGCAGCGGTTTCTACGCCGAGATG
GACCAGGGCCGCGCCGAATTCGGCGCCACCCCGGACGCCGGGACCTGCCGCTGGTTCGCCGAAGCCTTCTCG
CTATCGGCCAACGACCTGTCCGGGCATCCACCGCGGGTGGTGAGCACCGGCCTGCCCTACCTGCTCCTGCCG
GTAACCGCCGAGGCGCTGGGTCGAGCCCGTCAGGTCAACGATTTGCAAGAAGCCCTGGATAAACTCGGCGCG
GCGTTTGTCTATCTGCTCGACGTCGACGGGCGCGAGGGCCGCACCTGGGACAGCCTGGGGCTGGTGGAAGAC
GTGGCTACCGGCAGCGCTGCCGGTCCGGTCGCCGCCTACCTGGTGGAATACGGGCTTGCCGCGCGCGGCGAA
CCCTTCGTCCTGCACCAGGGACGCTTCCTCGAGCGGCCGAGCCGGCTCGACGTCCAGGTCGCGACAGACGGT
AGCGTCAGGGTCGGCGGCCACGTCCAACTGCTCGCCCGCGCCGAGCTGCTGACCTCGGCCTGA
Translation:
MSRRYWQLDVFAERPLTGNGLAVFDDASTLDDAAMQAWTRELRQFESIFLLPGDDPRAFGARIFTLEEELPF
AGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVRAGSGFYAEMDQGRAEFGATPDAGTCRWFAEAFS
LSANDLSGHPPRVVSTGLPYLLLPVTAEALGRARQVNDLQEALDKLGAAFVYLLDVDGREGRTWDSLGLVED
VATGSAAGPVAAYLVEYGLAARGEPFVLHQGRFLERPSRLDVQVATDGSVRVGGHVQLLARAELLTSA*
AnnotationID:2767GeneID:2759
AnnotatorUID: danlee
Modification Date/Time: 2003-11-17 16:04:32
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
98% identical (99% similar) to PA4716 of PAO1.
34% identical (46% similar) to phenazine biosynthesis protein,
phzF of Pseudomonas flourescens, gb|AAC18905.1|






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5521




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2759
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4494
                           PA4716_tr
                           translation of PA4716
                           284
                           98.94
                           99.29
                           0
                           1448.0
     

     
     
129932
                           gb|AAG08102.1|AE004885_7
                           (AE004885) hypothetical protein PA4716 [Pseudomonas aeruginosa PAO1]
                           284
                           98.94
                           99.29
                           0
                           1448.0
     

     






      

          
GC ORFID: 45761How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4716Glimmer Score: 

          
Start: 4830781Stop: 4831635

          
Length: 855


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4716 translation of PA4716Homolog Bit Score 562.0

          
Other Homologs:  t_PA4716 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGACGCTACTGGCAACTCGATGTGTTCGCCGAGCGTCCGCTCACCGGCAACGGCCTGGCCGTATTC 
GACGACGCCAGCACCCTCGATGACGCCGCCATGCAGGCCTGGACCCGCGAACTGCGCCAGTTCGAATCGATC 
TTCCTGCTGCCGGGCGACGACCCACGGGCCTTCGGCGCACGGATCTTCACCCTGGAGGAAGAACTGCCGTTC 
GCCGGCCACCCGCTGCTCGGCGCCGCCGCCCTGCTCCATCACCTGCGCGGCGGCGACAACGAACAGCACTGG 
ACGCTGCACCTGGCCAGCAAATCGGTGGCCCTGCGCAGCGTGCGGGCGGGCAGCGGTTTCTACGCCGAGATG 
GACCAGGGCCGCGCCGAATTCGGCGCCACCCCGGACGCCGGGACCTGCCGCTGGTTCGCCGAAGCCTTCTCG 
CTATCGGCCAACGACCTGTCCGGGCATCCACCGCGGGTGGTGAGCACCGGCCTGCCCTACCTGCTCCTGCCG 
GTAACCGCCGAGGCGCTGGGTCGAGCCCGTCAGGTCAACGATTTGCAAGAAGCCCTGGATAAACTCGGCGCG 
GCGTTTGTCTATCTGCTCGACGTCGACGGGCGCGAGGGCCGCACCTGGGACAGCCTGGGGCTGGTGGAAGAC 
GTGGCTACCGGCAGCGCTGCCGGTCCGGTCGCCGCCTACCTGGTGGAATACGGGCTTGCCGCGCGCGGCGAA 
CCCTTCGTCCTGCACCAGGGACGCTTCCTCGAGCGGCCGAGCCGGCTCGACGTCCAGGTCGCGACAGACGGT 
AGCGTCAGGGTCGGCGGCCACGTCCAACTGCTCGCCCGCGCCGAGCTGCTGACCTCGGCCTGA