ViewGene
Locus Name:
GeneID:
Location:

GeneID:2758
TrivialName: PA14_42390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42390
PAO1 Ortholog Locus:PA1713
Sequence Length:837
Protein Length:278
Start: 3777526
Stop: 3776690
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05102.1|AE004598_1 (AE004598) transcriptional regulator ExsA [Pseudomonas aeruginosa PAO1]
Identities = 278/278 (100%), Positives = 278/278 (100%)
Sequence:
ATGCAAGGAGCCAAATCTCTTGGCCGAAAGCAGATAACGTCTTGTCATTGGAACATTCCAACTTTCGAATAC
AGGGTAAACAAGGAAGAGGGCGTATATGTTCTGCTCGAGGGCGAACTGACCGTCCAGGACATCGATTCCACT
TTTTGCCTGGCGCCTGGCGAGTTGCTTTTCGTCCGCCGCGGAAGCTATGTCGTAAGTACCAAGGGAAAGGAC
AGCCGAATACTCTGGATTCCATTATCTGCCCAGTTTCTACAAGGCTTCGTCCAGCGCTTCGGCGCGCTGTTG
AGCGAAGTCGAGCGTTGCGACGAGCCCGTGCCGGGCATCATCGCGTTCGCTGCCACGCCTCTGTTGGCCGGT
TGCGTCAAGGGGTTGAAGGAATTGCTTGTGCATGAGCATCCGCCGATGCTCGCCTGCCTGAAGATCGAGGAG
TTGCTGATGCTCTTCGCGTTCAGTCCGCAGGGGCCGCTGCTGATGTCGGTCCTGCGGCAACTGAGCAACCGG
CATGTCGAGCGTCTGCAGCTATTCATGGAGAAGCACTACCTCAACGAGTGGAAGCTGTCCGACTTCTCCCGC
GAGTTCGGCATGGGGCTGACCACCTTCAAGGAGCTGTTCGGCAGTGTCTACGGGGTTTCGCCGCGCGCCTGG
ATCAGCGAGCGGAGAATCCTCTATGCCCATCAGTTGCTGCTCAACAGCGACATGAGCATCGTCGACATCGCC
ATGGAGGCGGGCTTTTCCAGTCAGTCCTATTTCACCCAGAGCTATCGCCGCCGTTTCGGCTGCACACCGAGC
CGCTCGCGGCAGGGGAAGGACGAATGCCGGGCTAAAAATAACTGA
Translation:
MQGAKSLGRKQITSCHWNIPTFEYRVNKEEGVYVLLEGELTVQDIDSTFCLAPGELLFVRRGSYVVSTKGKD
SRILWIPLSAQFLQGFVQRFGALLSEVERCDEPVPGIIAFAATPLLAGCVKGLKELLVHEHPPMLACLKIEE
LLMLFAFSPQGPLLMSVLRQLSNRHVERLQLFMEKHYLNEWKLSDFSREFGMGLTTFKELFGSVYGVSPRAW
ISERRILYAHQLLLNSDMSIVDIAMEAGFSSQSYFTQSYRRRFGCTPSRSRQGKDECRAKNN*
AnnotationID:2766GeneID:2758
AnnotatorUID: diggins
Modification Date/Time: 2005-02-28 07:07:44
Gene Name:exsA
Confidence Code:1
GeneProduct:transcriptional regulator ExsA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:S synthesis trans-regulatory protein
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO18036.1| (AY144116) LscA [Photorhabdus luminescens]
          Length = 272

 Score =  348 bits (893), Expect = 2e-95
 Identities = 174/272 (63%), Positives = 212/272 (77%), Gaps = 1/272 (0%)

>gb|AAD16833.1| (AF102990) transcriptional activator VirF [Yersinia enterocolitica]
          Length = 271

 Score =  290 bits (743), Expect = 5e-78
 Identities = 149/262 (56%), Positives = 191/262 (72%), Gaps = 2/262 (0%)

>dbj|BAC59962.1| (AP005079) transcriptional regulator ExsA [Vibrio parahaemolyticus]
          Length = 286

 Score =  213 bits (542), Expect = 1e-54
 Identities = 113/248 (45%), Positives = 159/248 (64%), Gaps = 2/248 (0%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 94.1 bits (234), Expect = 2e-20
Identities = 30/84 (35%), Positives = 52/84 (61%)







   
Genomic Context:






   
Comment:


















    ReferenceID:5519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22663




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37191




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2758_cdd.html


    		




 
URL:

















    ReferenceID:37844




  
Author/Investigator(s):
        Frank DW, Iglewski BH.





  
Title:
        Cloning and sequence analysis of a trans-regulatory locus required for exoenzyme S synthesis in Pseudomonas aeruginosa.




  
PubMed:
        1655713


MedLine:
        




    
Source:
J Bacteriol. 1991 Oct;173(20):6460-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1655713









           
Homologs By Global Alignment 

           

       



     
Gene ID:2758
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4493
                           PA1713_tr
                           translation of PA1713
                           278
                           99.99
                           99.99
                           0
                           1448.0
     

     
     
129920
                           gb|AAG05102.1|AE004598_1
                           (AE004598) transcriptional regulator ExsA [Pseudomonas aeruginosa PAO1]
                           278
                           99.99
                           99.99
                           0
                           1448.0
     

     
     
129921
                           gb|AAA25816.1|
                           (M64975) S synthesis trans-regulatory protein [Pseudomonas aeruginosa]
                           298
                           92.61
                           92.95
                           20
                           1440.0
     

     
     
129922
                           gb|AAO18036.1|
                           (AY144116) LscA [Photorhabdus luminescens]
                           279
                           62.36
                           75.98
                           8
                           895.0
     

     
     
129923
                           emb|CAE16147.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           279
                           62.00
                           75.62
                           8
                           890.0
     

     






      

          
GC ORFID: 45760How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1713Glimmer Score: 

          
Start: 1176383Stop: 1177219

          
Length: 837


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1713 translation of PA1713Homolog Bit Score 562.0

          
Other Homologs:  t_PA1713 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGGAGCCAAATCTCTTGGCCGAAAGCAGATAACGTCTTGTCATTGGAACATTCCAACTTTCGAATAC 
AGGGTAAACAAGGAAGAGGGCGTATATGTTCTGCTCGAGGGCGAACTGACCGTCCAGGACATCGATTCCACT 
TTTTGCCTGGCGCCTGGCGAGTTGCTTTTCGTCCGCCGCGGAAGCTATGTCGTAAGTACCAAGGGAAAGGAC 
AGCCGAATACTCTGGATTCCATTATCTGCCCAGTTTCTACAAGGCTTCGTCCAGCGCTTCGGCGCGCTGTTG 
AGCGAAGTCGAGCGTTGCGACGAGCCCGTGCCGGGCATCATCGCGTTCGCTGCCACGCCTCTGTTGGCCGGT 
TGCGTCAAGGGGTTGAAGGAATTGCTTGTGCATGAGCATCCGCCGATGCTCGCCTGCCTGAAGATCGAGGAG 
TTGCTGATGCTCTTCGCGTTCAGTCCGCAGGGGCCGCTGCTGATGTCGGTCCTGCGGCAACTGAGCAACCGG 
CATGTCGAGCGTCTGCAGCTATTCATGGAGAAGCACTACCTCAACGAGTGGAAGCTGTCCGACTTCTCCCGC 
GAGTTCGGCATGGGGCTGACCACCTTCAAGGAGCTGTTCGGCAGTGTCTACGGGGTTTCGCCGCGCGCCTGG 
ATCAGCGAGCGGAGAATCCTCTATGCCCATCAGTTGCTGCTCAACAGCGACATGAGCATCGTCGACATCGCC 
ATGGAGGCGGGCTTTTCCAGTCAGTCCTATTTCACCCAGAGCTATCGCCGCCGTTTCGGCTGCACACCGAGC 
CGCTCGCGGCAGGGGAAGGACGAATGCCGGGCTAAAAATAACTGA