ViewGene

Locus Name:
GeneID:
Location:

GeneID:2757
TrivialName: PA14_65480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65480
PAO1 Ortholog Locus:PA4956
Sequence Length:816
Protein Length:271
Start: 5832989
Stop: 5833804
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08341.1|AE004908_7 (AE004908) thiosulfate sulfurtransferase [Pseudomonas aeruginosa PAO1]
Identities = 269/271 (99%), Positives = 269/271 (99%)
Sequence:
ATGTCCGTCTTCTCCGACCTGCCATTGGTGATCGAGCCCAGCGATCTCGCGCCGCGCCTGGGCGCGCCCGAG
CTGATCCTGGTCGACCTGACCAGTGCCGCCCGCTACGCCGAAGGGCATATCCCCGGCGCGCGTTTCGTCGAC
CCCAAACGCACCCAGTGGGGACAACCCCCGGCACCCGGCCTGCTACCGGCCAAGGCCGACCTGGAAGCCCTG
TTCGGCGAGCTGGGCCACCGCCCGGAGGCGACCTACGTGGTCTACGACGACGAAGGCGGCGGCTGGGCGGGC
CGCTTCATCTGGCTGCTGGACGTGATCGGCCACCACCGCTACCACTATCTCAACGGCGGCCTGCCGGCCTGG
ATCGCCGACGCCCAGGTGCTCGACCGCGAGGTCCCGGCGCCTGTCGGCGGCCCGCTGCCGCTGACGTTGCAC
GACGAGCCCAGCGCGACCCGCGAATACCTGCAAAGCCGCCTCGGCGCCGCCGACCTGGCGGTATGGGATGCG
CGCAACCCCAGCGAATACGCCGGTACCAAGGTGCTCGCCGCGAAGGCCGGGCATGTGCCCGGCGCGATCAAT
TTCGAATGGACCGCCGGCATGGACCCGGCTCGCGCCCTGCGCATCCGCGCGGATATCGCCGAAGTCCTGGAG
GACCTCGGCATCACGCCGGACAAGGAAGTGATCACCCACTGCCAGACCCACCATCGCTCCGGCTTCACCTAC
CTGGTGGCCAAGGCGCTGGGCTACCCGCGGGTCAAAGGCTACGCCGGCTCCTGGTCGGAATGGGGCAACCAC
CCCGATACCCCTGTAGAGGTTTGA
Translation:
MSVFSDLPLVIEPSDLAPRLGAPELILVDLTSAARYAEGHIPGARFVDPKRTQWGQPPAPGLLPAKADLEAL
FGELGHRPEATYVVYDDEGGGWAGRFIWLLDVIGHHRYHYLNGGLPAWIADAQVLDREVPAPVGGPLPLTLH
DEPSATREYLQSRLGAADLAVWDARNPSEYAGTKVLAAKAGHVPGAINFEWTAGMDPARALRIRADIAEVLE
DLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKGYAGSWSEWGNHPDTPVEV*
AnnotationID:2765GeneID:2757
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 08:08:53
Gene Name:rhdA
Confidence Code:2
GeneProduct:thiosulfate sulfurtransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:rhodanese-related sulfurtransferase
Functional Category Confidence Code:5
COGs:COG2897,cd01449
Secondary Functional Category(ies):transport of small molecules
EC Number:2.8.1.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAB03239.1| (L42346) rhodanese [Azotobacter vinelandii]
          Length = 271

 Score =  468 bits (1203), Expect = e-131
 Identities = 216/271 (79%), Positives = 239/271 (88%)

>gb|AAO58383.1| (AE016873) rhodanese domain protein/phosphatidylserine
           decarboxylase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 613

 Score =  451 bits (1161), Expect = e-126
 Identities = 214/271 (78%), Positives = 233/271 (85%)

>gb|AAN70474.1|AE016689_2 (AE016792) thiosulfate sulfurtransferase [Pseudomonas putida
           KT2440]
          Length = 269

 Score =  421 bits (1082), Expect = e-117
 Identities = 205/271 (75%), Positives = 222/271 (81%), Gaps = 2/271 (0%)
Structural Features:
COG2897, SseA, Rhodanese-related sulfurtransferase 
[Inorganic ion transport and metabolism]
CD-Length = 285 residues,  97.9% aligned
Score =  261 bits (667), Expect = 8e-71
Identities = 106/279 (37%), Positives = 137/279 (49%), Gaps = 9/279 (3%)

cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain.
CD-Length = 118 residues, 100.0% aligned
Score =  122 bits (308), Expect = 4e-29
Genomic Context:
Comment:
ReferenceID:5517
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22661
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35099
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2757_cdd.html
URL:
ReferenceID:35891
Author/Investigator(s): Colnaghi R, Pagani S, Kennedy C, Drummond M.
Title: Cloning, sequence analysis and overexpression of the rhodanese gene of Azotobacter vinelandii.
PubMed: 8617271
MedLine:
Source:
Eur J Biochem. 1996 Feb 15;236(1):240-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8617271
ReferenceID:35892
Author/Investigator(s): Laudenbach DE, Ehrhardt D, Green L, Grossman A.
Title: Isolation and characterization of a sulfur-regulated gene encoding a periplasmically localized protein with sequence similarity to rhodanese.
PubMed: 1708376
MedLine:
Source:
 J Bacteriol. 1991 May;173(9):2751-60.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1708376
Homologs By Global Alignment
Gene ID:2757

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4492 PA4956_tr translation of PA4956 271 99.26 99.26 0 1451.0
129916 gb|AAG08341.1|AE004908_7 (AE004908) thiosulfate sulfurtransferase [Pseudomonas aeruginosa PAO1] 271 99.26 99.26 0 1451.0
129917 gb|AAB03239.1| (L42346) rhodanese [Azotobacter vinelandii] 271 79.70 88.19 0 1203.0
129919 gb|AAN70474.1|AE016689_2 (AE016792) thiosulfate sulfurtransferase [Pseudomonas putida KT2440] 271 75.64 81.91 2 1084.0
129918 gb|AAO58383.1| (AE016873) rhodanese domain protein/phosphatidylserine decarboxylase [Pseudomonas syringae pv. tomato str. DC3000] 613 34.91 38.00 342 1161.0
GC ORFID: 45759How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4956Glimmer Score:
Start: 5096670Stop: 5097485
Length: 816
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4956 translation of PA4956Homolog Bit Score 563.0
Other Homologs: t_PA4956 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGTCTTCTCCGACCTGCCATTGGTGATCGAGCCCAGCGATCTCGCGCCGCGCCTGGGCGCGCCCGAG
CTGATCCTGGTCGACCTGACCAGTGCCGCCCGCTACGCCGAAGGGCATATCCCCGGCGCGCGTTTCGTCGAC
CCCAAACGCACCCAGTGGGGACAACCCCCGGCACCCGGCCTGCTACCGGCCAAGGCCGACCTGGAAGCCCTG
TTCGGCGAGCTGGGCCACCGCCCGGAGGCGACCTACGTGGTCTACGACGACGAAGGCGGCGGCTGGGCGGGC
CGCTTCATCTGGCTGCTGGACGTGATCGGCCACCACCGCTACCACTATCTCAACGGCGGCCTGCCGGCCTGG
ATCGCCGACGCCCAGGTGCTCGACCGCGAGGTCCCGGCGCCTGTCGGCGGCCCGCTGCCGCTGACGTTGCAC
GACGAGCCCAGCGCGACCCGCGAATACCTGCAAAGCCGCCTCGGCGCCGCCGACCTGGCGGTATGGGATGCG
CGCAACCCCAGCGAATACGCCGGTACCAAGGTGCTCGCCGCGAAGGCCGGGCATGTGCCCGGCGCGATCAAT
TTCGAATGGACCGCCGGCATGGACCCGGCTCGCGCCCTGCGCATCCGCGCGGATATCGCCGAAGTCCTGGAG
GACCTCGGCATCACGCCGGACAAGGAAGTGATCACCCACTGCCAGACCCACCATCGCTCCGGCTTCACCTAC
CTGGTGGCCAAGGCGCTGGGCTACCCGCGGGTCAAAGGCTACGCCGGCTCCTGGTCGGAATGGGGCAACCAC
CCCGATACCCCTGTAGAGGTTTGA