ViewGene
Locus Name:
GeneID:
Location:

GeneID:2755
TrivialName: PA14_40430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40430
PAO1 Ortholog Locus:PA1860
Sequence Length:828
Protein Length:275
Start: 3613391
Stop: 3612564
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05249.1|AE004612_3 (AE004612) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 273/275 (99%), Positives = 275/275 (100%)
Sequence:
ATGCCCGGCCACCGCATCACCCTCACCGGAGAAAAGCAGACGCTCCTGATCACCCTCTACGCCAAGGCGCTG
GATAGCCGCCTGGACGATTCCATCCTCCATGACCGTTTCGCCGAGGAGGCGGTGCGGCAGATCGACTTCGAC
TTCTCCAGGGTCGCCCTCGGCAAAGGCAACGAACGGGCCCTGGCCATGCGCTCGCATTACTTCGACCAGGCC
TGCCGCGACTTCCTCGGCCGCCATCCCGAGGGGCAGGTGCTCAACCTCGGTTGCGGCCTGGACAGCCGTATC
TACCGGGTCGATCCGCCGGCCGAGCTGCCCTGGTTCGACCTTGACTACCCGGAGGTCATGGACCTGCGCGAG
CGGCTCTACCCGCCGCGCGCCGGCGCCTATCGGGCGCTGCGCCACTCGGTGGACGACGACGGCTGGCTGCAA
GGGGTGCCGCGCGAGCGGCCCGCCCTGGTCCTGGCCGAGGGGCTGATGCCTTATCTGCGGGAGTCCCAGGTG
CGACGCCTGGTGGAACGCCTGGTCGACCACCTGGGTAGCGGCGAGCTGCTGTTCGACGGCTACGGCCGCCTC
GGCATCATGCTGCTGCGCCTGTATCCGCCGCTGCGCGAGACCGGGGCGCAGGTGTACTGGAGCATCGACGAC
CCGCGCGAACTCGAGCGGTGGCATCCGGCCCTGCGCTTCATCGAGGAGGTCACCGACTATGACCCGCAGGAC
GTTGCCAAGCTGCCGCAGTCGTCGCGGCTGATGCTGCCGATCTACAACGGCTTCGCCTTCCTGCGGCGGATG
GGCCGGCTGATCCGCTACCGTTGGCCCAGGGTCTAG
Translation:
MPGHRITLTGEKQTLLITLYAKALDSRLDDSILHDRFAEEAVRQIDFDFSRVALGKGNERALAMRSHYFDQA
CRDFLGRHPEGQVLNLGCGLDSRIYRVDPPAELPWFDLDYPEVMDLRERLYPPRAGAYRALRHSVDDDGWLQ
GVPRERPALVLAEGLMPYLRESQVRRLVERLVDHLGSGELLFDGYGRLGIMLLRLYPPLRETGAQVYWSIDD
PRELERWHPALRFIEEVTDYDPQDVAKLPQSSRLMLPIYNGFAFLRRMGRLIRYRWPRV*
AnnotationID:2763GeneID:2755
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative O-Methyltransferase
Cell Localization:()
Synonyms:PA1860
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3315,pfam02409
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK65734.1| (AE007293) Putative polyketide synthase protein [Sinorhizobium
           meliloti]
          Length = 269

 Score =  229 bits (584), Expect = 1e-59
 Identities = 112/270 (41%), Positives = 176/270 (65%), Gaps = 3/270 (1%)

>gb|AAA67510.1| (M80674) O-methyltransferase [Streptomyces glaucescens]
          Length = 271

 Score =  197 bits (501), Expect = 5e-50
 Identities = 112/268 (41%), Positives = 153/268 (57%), Gaps = 1/268 (0%)






 
Structural Features:
COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 297 residues,  99.0% aligned
Score =  200 bits (509), Expect = 2e-52
Identities = 90/295 (30%), Positives = 133/295 (45%), Gaps = 27/295 (9%)

pfam02409, Omt_N, O-methyltransferase N-terminus
CD-Length = 107 residues,  93.5% aligned
Score = 85.0 bits (210), Expect = 1e-17
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 12/101 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37072




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2755_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2755
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4490
                           PA1860_tr
                           translation of PA1860
                           275
                           99.27
                           99.99
                           0
                           1451.0
     

     
     
129911
                           gb|AAG05249.1|AE004612_3
                           (AE004612) hypothetical protein PA1860 [Pseudomonas aeruginosa PAO1]
                           275
                           99.27
                           99.99
                           0
                           1451.0
     

     
     
129912
                           dbj|BAB50127.1|
                           (AP003001) hypothetical protein [Mesorhizobium loti]
                           275
                           51.27
                           70.18
                           4
                           741.0
     

     
     
129913
                           gb|AAK65734.1|
                           (AE007293) Putative polyketide synthase protein [Sinorhizobium meliloti]
                           275
                           40.72
                           64.36
                           6
                           587.0
     

     
     
129914
                           gb|AAA67510.1|
                           (M80674) O-methyltransferase [Streptomyces glaucescens]
                           290
                           39.65
                           54.13
                           34
                           501.0
     

     






      

          
GC ORFID: 45757How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1860Glimmer Score: 

          
Start: 1340519Stop: 1341346

          
Length: 828


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1860 translation of PA1860Homolog Bit Score 563.0

          
Other Homologs:  t_PA1860 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCCACCGCATCACCCTCACCGGAGAAAAGCAGACGCTCCTGATCACCCTCTACGCCAAGGCGCTG 
GATAGCCGCCTGGACGATTCCATCCTCCATGACCGTTTCGCCGAGGAGGCGGTGCGGCAGATCGACTTCGAC 
TTCTCCAGGGTCGCCCTCGGCAAAGGCAACGAACGGGCCCTGGCCATGCGCTCGCATTACTTCGACCAGGCC 
TGCCGCGACTTCCTCGGCCGCCATCCCGAGGGGCAGGTGCTCAACCTCGGTTGCGGCCTGGACAGCCGTATC 
TACCGGGTCGATCCGCCGGCCGAGCTGCCCTGGTTCGACCTTGACTACCCGGAGGTCATGGACCTGCGCGAG 
CGGCTCTACCCGCCGCGCGCCGGCGCCTATCGGGCGCTGCGCCACTCGGTGGACGACGACGGCTGGCTGCAA 
GGGGTGCCGCGCGAGCGGCCCGCCCTGGTCCTGGCCGAGGGGCTGATGCCTTATCTGCGGGAGTCCCAGGTG 
CGACGCCTGGTGGAACGCCTGGTCGACCACCTGGGTAGCGGCGAGCTGCTGTTCGACGGCTACGGCCGCCTC 
GGCATCATGCTGCTGCGCCTGTATCCGCCGCTGCGCGAGACCGGGGCGCAGGTGTACTGGAGCATCGACGAC 
CCGCGCGAACTCGAGCGGTGGCATCCGGCCCTGCGCTTCATCGAGGAGGTCACCGACTATGACCCGCAGGAC 
GTTGCCAAGCTGCCGCAGTCGTCGCGGCTGATGCTGCCGATCTACAACGGCTTCGCCTTCCTGCGGCGGATG 
GGCCGGCTGATCCGCTACCGTTGGCCCAGGGTCTAG