ViewGene
Locus Name:
GeneID:
Location:

GeneID:2754
TrivialName: PA14_46700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46700
PAO1 Ortholog Locus:PA1360
Sequence Length:894
Protein Length:297
Start: 4162978
Stop: 4162085
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04749.1|AE004565_8 (AE004565) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 297/297 (100%), Positives = 297/297 (100%)
Sequence:
ATGACCTCCACCTCCCGCGGCCTCGCCGGAACGCTGTTGCCGGTCGGCCTGCTATTGATCGCCATGGCCTCG
ATCCAGAGCGGCGCCTCCCTGGCGAAAAGCATGTTCCCCCTGGTCGGCGCCCAGGGCACCACGGCCCTGCGG
CTGTTCTTCGCCGCGCTGATCCTGCTGCTGCTCCTGCGTCCCTGGCGCAAGCGCCTGAGCCTGCAATCGCTG
CGCTCGGTGGTGGTCTACGGCATCGCCCTGGGCGGCATGAACCTGCTGTTCTATCTCTCGGTGCGCACCGTG
CCGCTGGGCATCGCGGTGGCCCTGGAGTTCACCGGGCCGCTGCTGGTGGCGATCCTCTCCTCGCGGCGCCTG
CTGGACTTCCTCTGGATCGGCCTGGCGGTGTTCGGCATCTGGCTGTTGCTGCCGCTGGGCAACAGCGCCGAG
CCGCTCGACCTGGTCGGTGCTGCCTATGCCCTCGGCGCCGGCGTGTGCTGGGCGCTGTACATCCTCTTCGGC
CAGCGCGCCGGCGCCGACCATGGCGCCCAGGGCGCCGCGCTGGGGGTGCTGGTGGCGGCGATCCTGGTTGTG
CCGATCGGCGTCGCCCACGCCGGCGCCGACCTCCTCGACCCGGCGCTGATCCCGTTGGCGCTGGGCGTCGCG
GTGCTCTCCACGGCCTTGCCCTACACCCTGGAAATGGTCGCGCTGACCCGCCTGCCGGCGCGCACCTTCGGC
ACCCTGATGAGCATCGAGCCGGCCTTCGGCGCGCTCTCCGGGCTGCTGTTCCTCGGCGAGCGGCTGAGCCCG
ACCCAATGGCTGGCCATCGGCGCGATCATCCTCGCCTCGGTCGGCACTACCCTCAGCGTCAAGTCGCGTGGC
GCCGCCCCGGCGCTACCGGCCAAGGACTGA
Translation:
MTSTSRGLAGTLLPVGLLLIAMASIQSGASLAKSMFPLVGAQGTTALRLFFAALILLLLLRPWRKRLSLQSL
RSVVVYGIALGGMNLLFYLSVRTVPLGIAVALEFTGPLLVAILSSRRLLDFLWIGLAVFGIWLLLPLGNSAE
PLDLVGAAYALGAGVCWALYILFGQRAGADHGAQGAALGVLVAAILVVPIGVAHAGADLLDPALIPLALGVA
VLSTALPYTLEMVALTRLPARTFGTLMSIEPAFGALSGLLFLGERLSPTQWLAIGAIILASVGTTLSVKSRG
AAPALPAKD*
AnnotationID:2762GeneID:2754
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 10:10:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:ybiF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative transport protein
Functional Category Confidence Code:5
COGs:COG5006
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67852.1|AE016416_5 (AE016782) transporter, EamA family [Pseudomonas putida KT2440]
          Length = 295

 Score =  428 bits (1101), Expect = e-119
 Identities = 218/295 (73%), Positives = 257/295 (87%), Gaps = 1/295 (0%)

>emb|CAE36399.1| (BX640426) putative membrane protein [Bordetella parapertussis]
          Length = 288

 Score =  370 bits (951), Expect = e-102
 Identities = 191/277 (68%), Positives = 221/277 (79%)

>gb|AAN79372.1|AE016757_276 (AE016757) Hypothetical transport protein ybiF [Escherichia coli
           CFT073]
          Length = 299

 Score =  347 bits (891), Expect = 4e-95
 Identities = 173/273 (63%), Positives = 214/273 (78%)








 
Structural Features:
COG5006, Predicted permease, DMT superfamily
CD-Length = 292 residues, 100.0% aligned
Score =  287 bits (736), Expect = 9e-79
Identities = 193/293 (65%), Positives = 228/293 (77%), Gaps = 2/293 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5511




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22655




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37407




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2754_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2754
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4489
                           PA1360_tr
                           translation of PA1360
                           297
                           99.99
                           99.99
                           0
                           1451.0
     

     
     
129883
                           gb|AAG04749.1|AE004565_8
                           (AE004565) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           297
                           99.99
                           99.99
                           0
                           1451.0
     

     
     
129884
                           gb|AAN67852.1|AE016416_5
                           (AE016782) transporter, EamA family [Pseudomonas putida KT2440]
                           297
                           73.40
                           86.53
                           2
                           1102.0
     

     
     
129885
                           emb|CAE36399.1|
                           (BX640426) putative membrane protein [Bordetella parapertussis]
                           297
                           64.64
                           75.08
                           9
                           950.0
     

     
     
129888
                           emb|CAE31812.1|
                           (BX640441) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           297
                           61.61
                           71.04
                           30
                           913.0
     

     






      

          
GC ORFID: 45756How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1360Glimmer Score: 

          
Start: 790931Stop: 791824

          
Length: 894


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1360 translation of PA1360Homolog Bit Score 563.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8092 (ORF: BLASTX 396.0), t_PA1360 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCCACCTCCCGCGGCCTCGCCGGAACGCTGTTGCCGGTCGGCCTGCTATTGATCGCCATGGCCTCG 
ATCCAGAGCGGCGCCTCCCTGGCGAAAAGCATGTTCCCCCTGGTCGGCGCCCAGGGCACCACGGCCCTGCGG 
CTGTTCTTCGCCGCGCTGATCCTGCTGCTGCTCCTGCGTCCCTGGCGCAAGCGCCTGAGCCTGCAATCGCTG 
CGCTCGGTGGTGGTCTACGGCATCGCCCTGGGCGGCATGAACCTGCTGTTCTATCTCTCGGTGCGCACCGTG 
CCGCTGGGCATCGCGGTGGCCCTGGAGTTCACCGGGCCGCTGCTGGTGGCGATCCTCTCCTCGCGGCGCCTG 
CTGGACTTCCTCTGGATCGGCCTGGCGGTGTTCGGCATCTGGCTGTTGCTGCCGCTGGGCAACAGCGCCGAG 
CCGCTCGACCTGGTCGGTGCTGCCTATGCCCTCGGCGCCGGCGTGTGCTGGGCGCTGTACATCCTCTTCGGC 
CAGCGCGCCGGCGCCGACCATGGCGCCCAGGGCGCCGCGCTGGGGGTGCTGGTGGCGGCGATCCTGGTTGTG 
CCGATCGGCGTCGCCCACGCCGGCGCCGACCTCCTCGACCCGGCGCTGATCCCGTTGGCGCTGGGCGTCGCG 
GTGCTCTCCACGGCCTTGCCCTACACCCTGGAAATGGTCGCGCTGACCCGCCTGCCGGCGCGCACCTTCGGC 
ACCCTGATGAGCATCGAGCCGGCCTTCGGCGCGCTCTCCGGGCTGCTGTTCCTCGGCGAGCGGCTGAGCCCG 
ACCCAATGGCTGGCCATCGGCGCGATCATCCTCGCCTCGGTCGGCACTACCCTCAGCGTCAAGTCGCGTGGC 
GCCGCCCCGGCGCTACCGGCCAAGGACTGA