ViewGene
Locus Name:
GeneID:
Location:

GeneID:2753
TrivialName: PA14_47880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47880
PAO1 Ortholog Locus:PA1264
Sequence Length:867
Protein Length:288
Start: 4260751
Stop: 4261617
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04653.1|AE004556_3 (AE004556) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 287/288 (99%), Positives = 287/288 (99%)
Sequence:
ATGAGCGCCAACCTGGATATCGAGCTGCTGCGTACCTTCCATGCCATCCTGCGCTTCGGCCGTTTCCTCGCC
GCGGCCAGCCACCTCAACCGCAGCCCCTCGGCGGTGAGCACCCACGTCCGGCGCCTGGAGGAACTGGCCGGC
GGCCGGCTGTTCGAGCGCGACAACCAGTCGGTGCGGCTGACCCCGCTGGGGCAGCGGTTCCAGCGCCAGACC
GCCGAGCTGCTGGAGACCCACGACCGCGTGCTCGCCGGGTTGCGCAGACGGGAAGAGCCGCTGCGGGTGCGC
TTCGGCATTTCCGAGGAATACGCCGGCAAGCTGCTCGGCCGTCTCCTGCCGCGCCTCGGCGCGGAACTGCCG
GCGCTGGAGCTGGAGGTGCTCACCGACGCCAGCGGCAGGCTGGCCGGACGCCTGCGGCGGGGCCAGCTGGAC
CTCGCCCTGCTGGTGCAAGCGCAAGACGAAACCCCGTACGACGGGCACTCCCGCGAGATCGGCGGCACCCAG
CCGGTGTGGGTTGCCGGCCACGGCCTGCGGATCGATCCGCAACGCCCGCTGCCGCTGGCCCTGCACGGCCAG
GGTTGTCCCTATCGGCAGGCGCTGCTGGAAGCCCTCGGCGCGACGGGCCGGCGCTGGCGCACGGTGGTCAGC
AGTCCCGGCGCGGCGGCGCTGGAAGCAGCCATCGAAGGCGGCCTGGCGATCGGCGTGATCGACCGTGCGCGG
GTCGGCCCGACGATGCGCGTGCTGGGGCCGGCGGAGGGCTTCGCCGAACTGCCCGCCCACCGCATTCGCCTG
GCCTTCGCCCCGGGAGAGCGGCCGCCGGCGCTGGAGCGCCTCGGCGAACTGATCGCCGAGGAGTTCCGGCTC
TGA
Translation:
MSANLDIELLRTFHAILRFGRFLAAASHLNRSPSAVSTHVRRLEELAGGRLFERDNQSVRLTPLGQRFQRQT
AELLETHDRVLAGLRRREEPLRVRFGISEEYAGKLLGRLLPRLGAELPALELEVLTDASGRLAGRLRRGQLD
LALLVQAQDETPYDGHSREIGGTQPVWVAGHGLRIDPQRPLPLALHGQGCPYRQALLEALGATGRRWRTVVS
SPGAAALEAAIEGGLAIGVIDRARVGPTMRVLGPAEGFAELPAHRIRLAFAPGERPPALERLGELIAEEFRL
*
AnnotationID:2761GeneID:2753
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 13:01:01
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1264
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00126
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57147.1| (AE016869) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 284

 Score =  202 bits (514), Expect = 2e-51
 Identities = 118/289 (40%), Positives = 172/289 (59%), Gaps = 6/289 (2%)








 
Structural Features:
pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
CD-Length = 60 residues, 100.0% aligned
Score = 59.7 bits (145), Expect = 4e-10
Identities = 27/60 (45%), Positives = 33/60 (55%)






   
Genomic Context:






   
Comment:


















    ReferenceID:5509




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22653




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37481




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2753_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2753
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4488
                           PA1264_tr
                           translation of PA1264
                           288
                           99.65
                           99.65
                           0
                           1452.0
     

     
     
129881
                           gb|AAG04653.1|AE004556_3
                           (AE004556) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           288
                           99.65
                           99.65
                           0
                           1452.0
     

     
     
129882
                           gb|AAO57147.1|
                           (AE016869) transcriptional regulator, LysR family [Pseudomonas syringae pv. tomato str. DC3000]
                           289
                           40.83
                           59.51
                           6
                           521.0
     

     






      

          
GC ORFID: 45755How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1264Glimmer Score: 

          
Start: 693158Stop: 692292

          
Length: 867


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1264 translation of PA1264Homolog Bit Score 563.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene819 (ORF: BLASTX 211.0), t_PA1264 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCAACCTGGATATCGAGCTGCTGCGTACCTTCCATGCCATCCTGCGCTTCGGCCGTTTCCTCGCC 
GCGGCCAGCCACCTCAACCGCAGCCCCTCGGCGGTGAGCACCCACGTCCGGCGCCTGGAGGAACTGGCCGGC 
GGCCGGCTGTTCGAGCGCGACAACCAGTCGGTGCGGCTGACCCCGCTGGGGCAGCGGTTCCAGCGCCAGACC 
GCCGAGCTGCTGGAGACCCACGACCGCGTGCTCGCCGGGTTGCGCAGACGGGAAGAGCCGCTGCGGGTGCGC 
TTCGGCATTTCCGAGGAATACGCCGGCAAGCTGCTCGGCCGTCTCCTGCCGCGCCTCGGCGCGGAACTGCCG 
GCGCTGGAGCTGGAGGTGCTCACCGACGCCAGCGGCAGGCTGGCCGGACGCCTGCGGCGGGGCCAGCTGGAC 
CTCGCCCTGCTGGTGCAAGCGCAAGACGAAACCCCGTACGACGGGCACTCCCGCGAGATCGGCGGCACCCAG 
CCGGTGTGGGTTGCCGGCCACGGCCTGCGGATCGATCCGCAACGCCCGCTGCCGCTGGCCCTGCACGGCCAG 
GGTTGTCCCTATCGGCAGGCGCTGCTGGAAGCCCTCGGCGCGACGGGCCGGCGCTGGCGCACGGTGGTCAGC 
AGTCCCGGCGCGGCGGCGCTGGAAGCAGCCATCGAAGGCGGCCTGGCGATCGGCGTGATCGACCGTGCGCGG 
GTCGGCCCGACGATGCGCGTGCTGGGGCCGGCGGAGGGCTTCGCCGAACTGCCCGCCCACCGCATTCGCCTG 
GCCTTCGCCCCGGGAGAGCGGCCGCCGGCGCTGGAGCGCCTCGGCGAACTGATCGCCGAGGAGTTCCGGCTC 
TGA