ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2752

TrivialName: PA14_02490

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_02490

PAO1 Ortholog Locus: PA0197

Sequence Length: 813

Protein Length: 270

Start: 224119

Stop: 224931

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03586.1|AE004458_1 (AE004458) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 270/270 (100%), Positives = 270/270 (100%)

Sequence:

ATGGCAACCCCCCAGCCCGTCGATGCCCGCACGCAGCCCTGGCGCGAGACGCCCGGCGGCGACCTGGTGGCG
CTCGGTCGGCCGGTTCGCCAGGCGTTGCACCTGGTTCGCCACAACCCGGCACAGGGTCGGGTGCTCAGCCGG
CGCGAGACGATCCTGCTGGTCCTGTTCGCCCTGACCCTGCACGGAGCGGTGATCCATTGGCTGAGCCAGCAG
AGAACCCCGGCGCTGCCCGAGGTGCCGCCACAGGTGCCGCCGATGACCATCGAGTTCACCGCCCCGGCGCCG
CCGGTGGTGGAACCGCCGCCGCCCGAGCCGTTGCCGCCAGTGGTCGAGGAACCGCCACCGCCGGTGGTCGAC
GAGAACGCGGTGAAGCCGCCGCCGCCGAAGCCGGTGCCCAAGCCGAAACCCAAGCCCAAGCCGCAACCCCGG
CCCAAGCCGGCGCCGAAGGCCGTCGAGCCGGCTCCGCCCGCGCCGCCACAACCCGCCGCGCCACCCGCCCCG
CCGGCGCCGGCCGCTGCTCCGGCGCCGTTGACGCCGCCGTCGGCGAACGCCGGCTACCTGCACAACCCGGCG
CCGGAATACCCCGCCCTGGCCATGCGCCGCGGCTGGGAGGGCACCGTGCTGTTGCGGGTGCATGTCCTCGCC
AGCGGCAGCCCGAGCGAGATCCAGGTGCAGAAGTCGAGCGGACGCGAAGCCCTCGACCAGGCCGCGGTGAAA
GCGGTCAAGCGCTGGTCCTTCGTTCCCGCCAAGCGCGGCGACAAGGCCGAGGACGGCTGGGTCAGCGTACCG
ATCGATTTCAAGTTGAACTGA

Translation:

MATPQPVDARTQPWRETPGGDLVALGRPVRQALHLVRHNPAQGRVLSRRETILLVLFALTLHGAVIHWLSQQ
RTPALPEVPPQVPPMTIEFTAPAPPVVEPPPPEPLPPVVEEPPPPVVDENAVKPPPPKPVPKPKPKPKPQPR
PKPAPKAVEPAPPAPPQPAAPPAPPAPAAAPAPLTPPSANAGYLHNPAPEYPALAMRRGWEGTVLLRVHVLA
SGSPSEIQVQKSSGREALDQAAVKAVKRWSFVPAKRGDKAEDGWVSVPIDFKLN*

AnnotationID:2760 GeneID:2752

AnnotatorUID: danlee

Modification Date/Time: 2005-07-06 12:12:48

Gene Name: tonB2

Confidence Code: 3

GeneProduct: putative TonB protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0810

Secondary Functional Category(ies): cell envelope biogenesis, outer membrane

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO55988.1| (AE016864) tonB protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 273

 Score =  369 bits (948), Expect = e-102
 Identities = 184/260 (70%), Positives = 205/260 (78%), Gaps = 6/260 (2%)

Structural Features:

COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes 
[Cell envelope biogenesis, outer membrane]
CD-Length = 244 residues,  82.0% aligned
Score = 75.2 bits (184), Expect = 9e-15
Identities = 73/200 (36%), Positives = 95/200 (47%), Gaps = 4/200 (2%)

Genomic Context:

Comment:

ReferenceID:5507

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22651

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35477

Author/Investigator(s): Zhao Q, Poole K.

Title: A second tonB gene in Pseudomonas aeruginosa is linked to the exbB and exbD genes.

PubMed: 10689178

MedLine:

Source:

FEMS Microbiol Lett. 2000 Mar 1;184(1):127-32.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10689178`

ReferenceID:38070

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2752_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2752

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4487 PA0197_tr translation of PA0197 270 99.99 99.99 0 1454.0

129875 gb|AAG03586.1|AE004458_1 (AE004458) hypothetical protein PA0197 [Pseudomonas aeruginosa PAO1] 270 99.99 99.99 0 1454.0

129876 gb|AAF04082.1|AF190125_1 (AF190125) TonB2 [Pseudomonas aeruginosa] 270 99.99 99.99 0 1454.0

129877 gb|AAO55988.1| (AE016864) tonB protein [Pseudomonas syringae pv. tomato str. DC3000] 275 68.00 75.63 7 952.0

129878 gb|AAO53817.1| (AE016856) tonB protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 302 45.36 55.29 61 621.0

GC ORFID: `45754`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0197`	Glimmer Score:
Start: `6025460`	Stop: `6026272`
Length: `813`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0197 translation of PA0197`	Homolog Bit Score `564.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene1253 (ORF: BLASTX 368.0), psyr_15may02_Scaffold2_revised_gene3075 (ORF: BLASTX 233.0), psyr_15may02_Scaffold4_revised_gene5863 (ORF: BLASTX 205.0), t_PA0197 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCAACCCCCCAGCCCGTCGATGCCCGCACGCAGCCCTGGCGCGAGACGCCCGGCGGCGACCTGGTGGCG CTCGGTCGGCCGGTTCGCCAGGCGTTGCACCTGGTTCGCCACAACCCGGCACAGGGTCGGGTGCTCAGCCGG CGCGAGACGATCCTGCTGGTCCTGTTCGCCCTGACCCTGCACGGAGCGGTGATCCATTGGCTGAGCCAGCAG AGAACCCCGGCGCTGCCCGAGGTGCCGCCACAGGTGCCGCCGATGACCATCGAGTTCACCGCCCCGGCGCCG CCGGTGGTGGAACCGCCGCCGCCCGAGCCGTTGCCGCCAGTGGTCGAGGAACCGCCACCGCCGGTGGTCGAC GAGAACGCGGTGAAGCCGCCGCCGCCGAAGCCGGTGCCCAAGCCGAAACCCAAGCCCAAGCCGCAACCCCGG CCCAAGCCGGCGCCGAAGGCCGTCGAGCCGGCTCCGCCCGCGCCGCCACAACCCGCCGCGCCACCCGCCCCG CCGGCGCCGGCCGCTGCTCCGGCGCCGTTGACGCCGCCGTCGGCGAACGCCGGCTACCTGCACAACCCGGCG CCGGAATACCCCGCCCTGGCCATGCGCCGCGGCTGGGAGGGCACCGTGCTGTTGCGGGTGCATGTCCTCGCC AGCGGCAGCCCGAGCGAGATCCAGGTGCAGAAGTCGAGCGGACGCGAAGCCCTCGACCAGGCCGCGGTGAAA GCGGTCAAGCGCTGGTCCTTCGTTCCCGCCAAGCGCGGCGACAAGGCCGAGGACGGCTGGGTCAGCGTACCG ATCGATTTCAAGTTGAACTGA