ViewGene

Locus Name:
GeneID:
Location:

GeneID:2750
TrivialName: PA14_11050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11050
PAO1 Ortholog Locus:PA4087
Sequence Length:825
Protein Length:274
Start: 956341
Stop: 955517
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07474.1|AE004825_3 (AE004825) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 270/274 (98%), Positives = 272/274 (99%)
Sequence:
ATGTCCGCCCACTCGCATTCCGGATGGATCACCGTCGGCGCCCTGGCCGACGGCTTCGCTCCGGACAACCAC
GTCCTTCCCGCCTGCGGCGATCTCGCCGGGCTCGAACGGGTCCTGCACTTCGCCAACGGCTGGGTCATCGAA
CATGCCTTCGACTCGCAGCGCCTGCGCTGGCGCCTGGCCGACGGCAGTGCCAGCGGCGAGTCGGACTACCGC
GCCAGTTCACTGCGGGAGAACCTTTACCTGGTGGATTTCCTCAAGCAGGAAAACGGCCGGCCGGTCTCGGTC
AGCCTGGTGCTGGACTTCGACAACCAGGCGTTCACCGCGGTGCTCGGCCATCTGCCCGACCGCACGGCCTGC
GAACAGGGTCTGTTCTCCCGGGCCCTGGCCGGCCGGGAACTGACCGGCGTCGAGGCCGAGTTCCTGCATGGC
AGCCTCGACCGCCCGTGGCAGCCCGGCGCCTGCCCGCACGTCCCCAGCGACGAGTTGGTCGGCCTGCGCAAC
CGCTACGTCTACAGCGCCAGCGAGGCCTACGAACACGTCTACCTCAATCCCGACTTCTACACCTGGCAATGC
CTGCGCGGCGCCGAGCGaGGGCTGGCCGATACCGACCGCTGCCACTGCTACCGACTGGCCGAACGCCTGTAC
CTGTTCGTCTGGCGCGAGAAGATCGTGCCGACCCTCGGCGTGCTGCTGATCGACCTGGAAGCCGGGCGCACC
GACGGCAAGATCTTCGGCTACCAGGACGACGACTTCGCCACCCCGGTTAACTTCCCGGTCGGCGCCCTGGCC
CAGGTGCTCAACCAGACCCGCCACGACCTGTGA
Translation:
MSAHSHSGWITVGALADGFAPDNHVLPACGDLAGLERVLHFANGWVIEHAFDSQRLRWRLADGSASGESDYR
ASSLRENLYLVDFLKQENGRPVSVSLVLDFDNQAFTAVLGHLPDRTACEQGLFSRALAGRELTGVEAEFLHG
SLDRPWQPGACPHVPSDELVGLRNRYVYSASEAYEHVYLNPDFYTWQCLRGAERGLADTDRCHCYRLAERLY
LFVWREKIVPTLGVLLIDLEAGRTDGKIFGYQDDDFATPVNFPVGALAQVLNQTRHDL*
AnnotationID:2758GeneID:2750
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 08:08:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:moaF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAA05890.1| (D28533) MoaF [Klebsiella aerogenes]
          Length = 262

 Score =  218 bits (556), Expect = 2e-56
 Identities = 128/272 (47%), Positives = 159/272 (58%), Gaps = 18/272 (6%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:5503
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22647
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2750

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4484 PA4087_tr translation of PA4087 274 98.54 99.27 0 1453.0
129860 gb|AAG07474.1|AE004825_3 (AE004825) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 274 98.54 99.27 0 1453.0
129861 dbj|BAA05890.1| (D28533) MoaF [Klebsiella aerogenes] 281 46.26 57.29 26 572.0
GC ORFID: 45752How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4087Glimmer Score:
Start: 3997596Stop: 3998420
Length: 825
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4087 translation of PA4087Homolog Bit Score 564.0
Other Homologs: t_PA4087 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCGCCCACTCGCATTCCGGATGGATCACCGTCGGCGCCCTGGCCGACGGCTTCGCTCCGGACAACCAC
GTCCTTCCCGCCTGCGGCGATCTCGCCGGGCTCGAACGGGTCCTGCACTTCGCCAACGGCTGGGTCATCGAA
CATGCCTTCGACTCGCAGCGCCTGCGCTGGCGCCTGGCCGACGGCAGTGCCAGCGGCGAGTCGGACTACCGC
GCCAGTTCACTGCGGGAGAACCTTTACCTGGTGGATTTCCTCAAGCAGGAAAACGGCCGGCCGGTCTCGGTC
AGCCTGGTGCTGGACTTCGACAACCAGGCGTTCACCGCGGTGCTCGGCCATCTGCCCGACCGCACGGCCTGC
GAACAGGGTCTGTTCTCCCGGGCCCTGGCCGGCCGGGAACTGACCGGCGTCGAGGCCGAGTTCCTGCATGGC
AGCCTCGACCGCCCGTGGCAGCCCGGCGCCTGCCCGCACGTCCCCAGCGACGAGTTGGTCGGCCTGCGCAAC
CGCTACGTCTACAGCGCCAGCGAGGCCTACGAACACGTCTACCTCAATCCCGACTTCTACACCTGGCAATGC
CTGCGCGGCGCCGAGCGaGGGCTGGCCGATACCGACCGCTGCCACTGCTACCGACTGGCCGAACGCCTGTAC
CTGTTCGTCTGGCGCGAGAAGATCGTGCCGACCCTCGGCGTGCTGCTGATCGACCTGGAAGCCGGGCGCACC
GACGGCAAGATCTTCGGCTACCAGGACGACGACTTCGCCACCCCGGTTAACTTCCCGGTCGGCGCCCTGGCC
CAGGTGCTCAACCAGACCCGCCACGACCTGTGA