ViewGene
Locus Name:
GeneID:
Location:

GeneID:275
TrivialName: PA14_43650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43650
PAO1 Ortholog Locus:PA1613
Sequence Length:2118
Protein Length:705
Start: 3884902
Stop: 3887019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05002.1|AE004589_5 (AE004589) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 699/705 (99%), Positives = 699/705 (99%), Gaps = 3/705 (0%)
Sequence:
GTGCCCATCGCTTCGCGTGCTCCCGTCTCCCTGACCCTGCTGGCCCTGCTGGCCCTGCTGTTCGGCAGCAAG
CTCGCGGCCGCCGACCTGTTCAACGATCCCAGCGGCGTTCCCGAAGTATTGACCGCGACACGCCTGAAACAA
TCCCCGGCGGAAGTTCCCGGCAGCATCAGCGTGCTCGACCGCGAGCTGATCGTCGCCAGCGGCGCCCGCGAC
ATTCCCGAACTGATGCGCCTGGTCCCGGGCATGATGGTCGGCTACCTGTCCGGCAACCAGCCCACGGTCAAC
TACCACGGCACCAGCATGTCGGGGGCGCGGCGCCTGCAAGTACTGATCGACGGTCGCTCGGTGTACCGCCCG
GGCCTCGCCAGCGTCGACTGGAGCGACCTGCCGCTGGCCCTCGAGGATGTCGAGCGGATCGAAGTGTTCCGC
GGTCCGAATACCGTCAGCTACGGCGCCAACGCATTGATGGGGGTGATCAACATCATCACCCGGGCCCCCGGC
GAGTCGCCCGGCACGCGCCTGAAATACACCGCAGGCCAGCGCGGCATCCGCGACTGGTACGCCAGCCAGAGC
ATCGCCCTGGAAGACAGCGACTTCCGCCTGTCGCTGTCCGGCCAGGAAGACGACGGCTTCGACCACGACCTC
GACGGTCACGCCCTGCGCGACGGCCGCCGGCTCAGCCGCTTCAACCTCAACGCCAGCCACAGCCTGGCGCCG
AACCAGAGCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCTCGAACCAGCACCCCTACGCCTACCGCTCGCCG
TTTCCCCAGGTTCCCGACGACGTCGACAACTCCGATACGCTCGCCCACGACTATGCCGGTTCGCTGCGCTGG
AACGTCGACCTCGACCCACGCCACAGCTTCTATATACAAGGCTACGCGCAGCACTGGGAGCGCCGGCAGGAA
TGGAACGCCTGCGAGGCGGGCATCGCCTTCAGCCCGCAACTGGCGCAACTCTGGGAACTGAACCCGGACTAC
CTGCGCAGGTTCGCCGACGACCCTACCCGGCTGCCGCCCGGCAGCGCCCAGGAGCTGCAACTGGCGACCCAG
GTCCTCGACCAGCTACGCAACGGCGGACTGCGCCCGGTCTGCGGACGGGTCGACCGCAACATCCGGGAAAGC
CGCTACGACCTGGAGATGCAGGACACCCTCAGCCTGGGCGACAACCTGCGCCTGCTGAACGGCCTGAGCTAC
CGCTACGACCAGGCAAACTCCGAGACCTTCTACGGCGGCAGGGTCAGCAGCCAGATCTGGCGGCTGTTCAGC
CAGTTGGAGTGGCATGCCGGCGAACACTGGCTGCTGCAGGGCGGCGGGATGCTCGAAGACGTCGAGGGCTCC
GGCAGCTCGTTCAGCCCGCGGCTGGCGGTGAACTACCTGTTCAACCCCCAGCACAGTCTGCGCGCGGTCTAT
TCGGAGGCGGTGCGGTCGCCGGGCATGTACGAAAACGACGTCGACTGGCGCTACCGGGTCCGCCACCTGACA
CCGGCGCCCTACGGGCAGAGCGAAGCCTACTACTTCGCCAGCGCCCACGGCCCCGGCGACCTGGGCAAGGAA
CACACCCGTTCGCGCGAGATCGGCTACAACGGTTTTTTCCGCGAGACCGGGCTGGCCATGGATGTGCGCCTG
TTCCACGAGGAAATCACCGGACTGATCAGCGATCCGCTCAGCGTCGTCGACTTCAGCCCGGACAACGGCGAT
CGCATCCGCTTCTCCGGCGCGGAAGGCCAGCTCGACTGGCGCCTGGGCCTGCGCGACCGCCTGCGCGCCACC
TACGCCTATCTCGACTACGACGCCACCAGTCGCTACGACCGGCGCCTGACCGCCCGCCACGGCGGCTCGGCC
GGCTGGATGCGCGACTGGGGCCAAGGCTGGTCCAGCGCCCTCTTCTATTACGGCGACGATTCGCTCAATGGA
CATCGTTTCGAACGCGTCGACCTGCGCCTGGCCAAGCGCATTCCCCTGGGCAAGGCCGCCCTGGAATTGGCC
GGCGTGCTCCAACAGCGTCTCGACGACCAACCGCTGACTTTTCCCGACAACCGCTACGACAGCCGCCACCTG
CTCTACTTCAGCGCCGAGGTGACGTTCTAG
Translation:
MPIASRAPVSLTLLALLALLFGSKLAAADLFNDPSGVPEVLTATRLKQSPAEVPGSISVLDRELIVASGARD
IPELMRLVPGMMVGYLSGNQPTVNYHGTSMSGARRLQVLIDGRSVYRPGLASVDWSDLPLALEDVERIEVFR
GPNTVSYGANALMGVINIITRAPGESPGTRLKYTAGQRGIRDWYASQSIALEDSDFRLSLSGQEDDGFDHDL
DGHALRDGRRLSRFNLNASHSLAPNQSLEWQLAAKEGSNQHPYAYRSPFPQVPDDVDNSDTLAHDYAGSLRW
NVDLDPRHSFYIQGYAQHWERRQEWNACEAGIAFSPQLAQLWELNPDYLRRFADDPTRLPPGSAQELQLATQ
VLDQLRNGGLRPVCGRVDRNIRESRYDLEMQDTLSLGDNLRLLNGLSYRYDQANSETFYGGRVSSQIWRLFS
QLEWHAGEHWLLQGGGMLEDVEGSGSSFSPRLAVNYLFNPQHSLRAVYSEAVRSPGMYENDVDWRYRVRHLT
PAPYGQSEAYYFASAHGPGDLGKEHTRSREIGYNGFFRETGLAMDVRLFHEEITGLISDPLSVVDFSPDNGD
RIRFSGAEGQLDWRLGLRDRLRATYAYLDYDATSRYDRRLTARHGGSAGWMRDWGQGWSSALFYYGDDSLNG
HRFERVDLRLAKRIPLGKAALELAGVLQQRLDDQPLTFPDNRYDSRHLLYFSAEVTF*
AnnotationID:285GeneID:275
AnnotatorUID: diggins
Modification Date/Time: 2005-02-26 19:07:31
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane receptor protein
Cell Localization:()
Synonyms:PA1613
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01347,COG4771,COG1629
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08330.1|AE016813_82 (AE016813) Outer membrane receptor for ferrienterochelin and
           colicins [Vibrio vulnificus CMCP6]
          Length = 685

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 50/142 (35%), Positives = 83/142 (58%)








 
Structural Features:
cd01347, ligand_gated_channel
CD-Length = 672 residues,  81.8% aligned
Score =  137 bits (345), Expect = 5e-33

COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins 
[Inorganic ion transport and metabolism]
CD-Length = 699 residues,  81.8% aligned
Score =  136 bits (343), Expect = 1e-32
Identities = 136/639 (21%), Positives = 218/639 (34%), Gaps = 111/639 (17%)

COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport 
[Inorganic ion transport and metabolism]
CD-Length = 768 residues,  89.7% aligned
Score =  127 bits (318), Expect = 6e-30
Identities = 137/714 (19%), Positives = 212/714 (29%), Gaps = 76/714 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17695




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37270




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:275_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:275
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
456
                           PA1613_tr
                           translation of PA1613
                           705
                           99.14
                           99.14
                           3
                           3684.0
     

     
     
24262
                           gb|AAG05002.1|AE004589_5
                           (AE004589) hypothetical protein PA1613 [Pseudomonas aeruginosa PAO1]
                           705
                           99.00
                           99.14
                           3
                           3681.0
     

     
     
24263
                           gb|AAN69752.1|AE016611_10
                           (AE016789) conserved hypothetical protein [Pseudomonas putida KT2440]
                           720
                           59.30
                           73.75
                           31
                           2222.0
     

     






      

          
GC ORFID: 43277How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1613Glimmer Score: 

          
Start: 1069007Stop: 1066890

          
Length: 2118


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1613 translation of PA1613Homolog Bit Score 1422.0

          
Other Homologs:  t_PA1613 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCCATCGCTTCGCGTGCTCCCGTCTCCCTGACCCTGCTGGCCCTGCTGGCCCTGCTGTTCGGCAGCAAG 
CTCGCGGCCGCCGACCTGTTCAACGATCCCAGCGGCGTTCCCGAAGTATTGACCGCGACACGCCTGAAACAA 
TCCCCGGCGGAAGTTCCCGGCAGCATCAGCGTGCTCGACCGCGAGCTGATCGTCGCCAGCGGCGCCCGCGAC 
ATTCCCGAACTGATGCGCCTGGTCCCGGGCATGATGGTCGGCTACCTGTCCGGCAACCAGCCCACGGTCAAC 
TACCACGGCACCAGCATGTCGGGGGCGCGGCGCCTGCAAGTACTGATCGACGGTCGCTCGGTGTACCGCCCG 
GGCCTCGCCAGCGTCGACTGGAGCGACCTGCCGCTGGCCCTCGAGGATGTCGAGCGGATCGAAGTGTTCCGC 
GGTCCGAATACCGTCAGCTACGGCGCCAACGCATTGATGGGGGTGATCAACATCATCACCCGGGCCCCCGGC 
GAGTCGCCCGGCACGCGCCTGAAATACACCGCAGGCCAGCGCGGCATCCGCGACTGGTACGCCAGCCAGAGC 
ATCGCCCTGGAAGACAGCGACTTCCGCCTGTCGCTGTCCGGCCAGGAAGACGACGGCTTCGACCACGACCTC 
GACGGTCACGCCCTGCGCGACGGCCGCCGGCTCAGCCGCTTCAACCTCAACGCCAGCCACAGCCTGGCGCCG 
AACCAGAGCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCTCGAACCAGCACCCCTACGCCTACCGCTCGCCG 
TTTCCCCAGGTTCCCGACGACGTCGACAACTCCGATACGCTCGCCCACGACTATGCCGGTTCGCTGCGCTGG 
AACGTCGACCTCGACCCACGCCACAGCTTCTATATACAAGGCTACGCGCAGCACTGGGAGCGCCGGCAGGAA 
TGGAACGCCTGCGAGGCGGGCATCGCCTTCAGCCCGCAACTGGCGCAACTCTGGGAACTGAACCCGGACTAC 
CTGCGCAGGTTCGCCGACGACCCTACCCGGCTGCCGCCCGGCAGCGCCCAGGAGCTGCAACTGGCGACCCAG 
GTCCTCGACCAGCTACGCAACGGCGGACTGCGCCCGGTCTGCGGACGGGTCGACCGCAACATCCGGGAAAGC 
CGCTACGACCTGGAGATGCAGGACACCCTCAGCCTGGGCGACAACCTGCGCCTGCTGAACGGCCTGAGCTAC 
CGCTACGACCAGGCAAACTCCGAGACCTTCTACGGCGGCAGGGTCAGCAGCCAGATCTGGCGGCTGTTCAGC 
CAGTTGGAGTGGCATGCCGGCGAACACTGGCTGCTGCAGGGCGGCGGGATGCTCGAAGACGTCGAGGGCTCC 
GGCAGCTCGTTCAGCCCGCGGCTGGCGGTGAACTACCTGTTCAACCCCCAGCACAGTCTGCGCGCGGTCTAT 
TCGGAGGCGGTGCGGTCGCCGGGCATGTACGAAAACGACGTCGACTGGCGCTACCGGGTCCGCCACCTGACA 
CCGGCGCCCTACGGGCAGAGCGAAGCCTACTACTTCGCCAGCGCCCACGGCCCCGGCGACCTGGGCAAGGAA 
CACACCCGTTCGCGCGAGATCGGCTACAACGGTTTTTTCCGCGAGACCGGGCTGGCCATGGATGTGCGCCTG 
TTCCACGAGGAAATCACCGGACTGATCAGCGATCCGCTCAGCGTCGTCGACTTCAGCCCGGACAACGGCGAT 
CGCATCCGCTTCTCCGGCGCGGAAGGCCAGCTCGACTGGCGCCTGGGCCTGCGCGACCGCCTGCGCGCCACC 
TACGCCTATCTCGACTACGACGCCACCAGTCGCTACGACCGGCGCCTGACCGCCCGCCACGGCGGCTCGGCC 
GGCTGGATGCGCGACTGGGGCCAAGGCTGGTCCAGCGCCCTCTTCTATTACGGCGACGATTCGCTCAATGGA 
CATCGTTTCGAACGCGTCGACCTGCGCCTGGCCAAGCGCATTCCCCTGGGCAAGGCCGCCCTGGAATTGGCC 
GGCGTGCTCCAACAGCGTCTCGACGACCAACCGCTGACTTTTCCCGACAACCGCTACGACAGCCGCCACCTG 
CTCTACTTCAGCGCCGAGGTGACGTTCTAG