ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2748

TrivialName: PA14_42470

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_42470

PAO1 Ortholog Locus: PA1706

Sequence Length: 885

Protein Length: 294

Start: 3782515

Stop: 3781631

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAO91771.1| (AY232997) PcrV [Pseudomonas aeruginosa] Identities = 291/294 (98%), Positives = 291/294 (98%)

Sequence:

ATGGAAGTCAGAAACTTTAATGCCGCTCGCGAGCTGTTCCTGGACGAACTCCTGGCCGCGCCGGCGGCGCCT
GCCAGTGCCGAGCAGGAGGAACTGCTGGCCTTGTTGCGCAGCGAGCGGATCGTGCTGGCCCACGCCGGCCAG
CCGCTGAGCGAGGCGCAAGTGCTCAAGGCGCTCGCCTGGTTGCTCGCGGCCAATCCGTCCGCGCCTCCGGGG
CAGGGCCTCGAGGTACTCCGCGAAGTCCTGCAGGCACGTCGGCAGCCCGGTGCGCAGTGGGATTTGCGCGAG
TTCCTGGTGTCGGCCTATTTCAGCCTGCACGGCCGTCTCGACGAGGATGTCATCGGTGTCTACAAGGATGTC
CTGCAGACCCAGGACGGCAAGCGCAAGGCGCTGCTCGACGAGCTCAAGGCGCTGACCGCGGAGTTGAAGGTC
TACAGCGTGATCCAGTCGCAGATCAACGCCGCGCTGTCGGCCAAGCAGGGCATCAGGATCGACGCTGGCGGT
ATCGATCTGGTCGACCCCACGCTCTATGGCTATGCCGTCGGCGATCCCAGGTGGAAGGACAGCCCCGAGTAT
GCGCTGCTGAGCAATCTGGATACCTTCAGCGGCAAGCTGTCGATCAAGGATTTTCTCAGCGGCTCGCCGAAG
CAGAGCGGGGAACTCAAGGGCCTCAAGGATGAGTACCCCTTCGAGAAGGACAACAACCCGGTCGGCAATTTC
GCCACCACGGTGAGCGACCGCTCGCGTCCGCTGAACGACAAGGTCAACGAGAAGACCACCCTGCTCAACGAC
ACCAGCTCCCGCTACAACTCGGCGGTCGAGGCGCTCAACCGCTTCATCCAGAAATACGACAGCGTCCTGCGC
GACATTCTCAGCGCGATCTAG

Translation:

MEVRNFNAARELFLDELLAAPAAPASAEQEELLALLRSERIVLAHAGQPLSEAQVLKALAWLLAANPSAPPG
QGLEVLREVLQARRQPGAQWDLREFLVSAYFSLHGRLDEDVIGVYKDVLQTQDGKRKALLDELKALTAELKV
YSVIQSQINAALSAKQGIRIDAGGIDLVDPTLYGYAVGDPRWKDSPEYALLSNLDTFSGKLSIKDFLSGSPK
QSGELKGLKDEYPFEKDNNPVGNFATTVSDRSRPLNDKVNEKTTLLNDTSSRYNSAVEALNRFIQKYDSVLR
DILSAI*

AnnotationID:2756 GeneID:2748

AnnotatorUID: diggins

Modification Date/Time: 2005-01-18 06:06:08

Gene Name: pcrV

Confidence Code: 1

GeneProduct: type III secretion protein PcrV

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO18053.1| (AY144116) LssV [Photorhabdus luminescens]
          Length = 325

 Score =  207 bits (526), Expect = 8e-53
 Identities = 135/327 (41%), Positives = 189/327 (57%), Gaps = 35/327 (10%)

>gb|AAD16815.1| (AF102990) LcrV [Yersinia enterocolitica]
          Length = 324

 Score =  187 bits (475), Expect = 6e-47
 Identities = 117/295 (39%), Positives = 172/295 (58%), Gaps = 32/295 (10%)

Structural Features:

no data found via CDD Search

Genomic Context:

Comment:

ReferenceID:5499

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:22643

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37851

Author/Investigator(s): Nanao M, Ricard-Blum S, Di Guilmi AM, Lemaire D, Lascoux D, Chabert J, Attree I, Dessen A.

Title: Type III secretion proteins PcrV and PcrG from Pseudomonas aeruginosa form a 1:1 complex through high affinity interactions.

PubMed: 14565848

MedLine:

Source:

BMC Microbiol. 2003 Oct 18;3(1):21.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=14565848`

Homologs By Global Alignment

Gene ID:2748

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

4482 PA1706_tr translation of PA1706 294 98.97 98.97 0 1453.0

129660 gb|AAO91771.1| (AY232997) PcrV [Pseudomonas aeruginosa] 294 98.97 98.97 0 1453.0

129661 gb|AAG05095.1|AE004597_9 (AE004597) type III secretion protein PcrV [Pseudomonas aeruginosa PAO1] 294 98.97 98.97 0 1453.0

129662 gb|AAC45935.1| (AF010149) PcrV [Pseudomonas aeruginosa] 294 98.97 98.97 0 1453.0

129663 emb|CAE16130.1| (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 308 41.88 61.03 18 550.0

GC ORFID: `45750`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1706`	Glimmer Score:
Start: `1171394`	Stop: `1172278`
Length: `885`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1706 translation of PA1706`	Homolog Bit Score `564.0`
Other Homologs: `t_PA1706 (ORF: GLIMMER)`
GC ORF Sequence
ATGGAAGTCAGAAACTTTAATGCCGCTCGCGAGCTGTTCCTGGACGAACTCCTGGCCGCGCCGGCGGCGCCT GCCAGTGCCGAGCAGGAGGAACTGCTGGCCTTGTTGCGCAGCGAGCGGATCGTGCTGGCCCACGCCGGCCAG CCGCTGAGCGAGGCGCAAGTGCTCAAGGCGCTCGCCTGGTTGCTCGCGGCCAATCCGTCCGCGCCTCCGGGG CAGGGCCTCGAGGTACTCCGCGAAGTCCTGCAGGCACGTCGGCAGCCCGGTGCGCAGTGGGATTTGCGCGAG TTCCTGGTGTCGGCCTATTTCAGCCTGCACGGCCGTCTCGACGAGGATGTCATCGGTGTCTACAAGGATGTC CTGCAGACCCAGGACGGCAAGCGCAAGGCGCTGCTCGACGAGCTCAAGGCGCTGACCGCGGAGTTGAAGGTC TACAGCGTGATCCAGTCGCAGATCAACGCCGCGCTGTCGGCCAAGCAGGGCATCAGGATCGACGCTGGCGGT ATCGATCTGGTCGACCCCACGCTCTATGGCTATGCCGTCGGCGATCCCAGGTGGAAGGACAGCCCCGAGTAT GCGCTGCTGAGCAATCTGGATACCTTCAGCGGCAAGCTGTCGATCAAGGATTTTCTCAGCGGCTCGCCGAAG CAGAGCGGGGAACTCAAGGGCCTCAAGGATGAGTACCCCTTCGAGAAGGACAACAACCCGGTCGGCAATTTC GCCACCACGGTGAGCGACCGCTCGCGTCCGCTGAACGACAAGGTCAACGAGAAGACCACCCTGCTCAACGAC ACCAGCTCCCGCTACAACTCGGCGGTCGAGGCGCTCAACCGCTTCATCCAGAAATACGACAGCGTCCTGCGC GACATTCTCAGCGCGATCTAG