ViewGene
Locus Name:
GeneID:
Location:

GeneID:2747
TrivialName: PA14_51420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51420
PAO1 Ortholog Locus:PA0997
Sequence Length:852
Protein Length:283
Start: 4569922
Stop: 4569071
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04386.1|AE004532_10 (AE004532) Homologous to beta-keto-acyl-acyl-carrier protein synthase [Pseudomonas aeruginosa PAO1]
Identities = 282/283 (99%), Positives = 283/283 (100%)
Sequence:
ATGTTGATTCAGGCTGTGGGGGTGAACCTGCCCCCATCCTATGTGTGTCTGGAGGGGCCGCTGGGAGGCGAA
CGCCCTCGCGCCCAGGGCGACGAGATGCTGATGCAGCGCTTGCTGCCGGCGGTTCGCGAAGCCCTGGACGAG
GCGGCGGTCAAGCCCGAGGAGATCGACCTGATCGTCGGCCTCGCCCTGTCTCCCGACCATCTGATCGAGAAC
CGCGACATCATGGCGCCGAAGATCGGCCATCCGTTGCAGAAGATCCTCGGCGCGAATCGCGCCCATGTCTTC
GACCTCACCGACTCGAGCCTGGCTCGCGCCCTCTACGTGGTCGATACCCTCGCCAGCGACCAGGGCTATCGC
AACGTCCTGGTCGTGCGCGGCGAATCCAGCCAGGGATTGGAAGTGGACAGCGAGTCTGGCTTCGCCCTTGCC
GACGGCGCCCTGGCGCTGCTCTGCCGGCCGACCGGCAAGGCCGCGTTCCGTCGCGGTGCGCTGGGCGGTGAT
CCGGCGCAGGAATGGCTGCCGCTGAGCATTCCGCTGAATACCGATATTCGCCAGGTAGGCGACGTCAAGGGA
CACCTCAACCTGCCGGCCCAACCTGGATTGCCCGAAGCGGTACGCGCCGGATTCACCCGTTTGGCCGGGGAC
TTCCCGCAACTGAACTGGGTGCGCGAGGAATGGTTCGGCCAGGGACGGCCCGATGGTCGTTGCCTGGGGCCG
TTCGAACTGGCGTCGCAACTGCGCGCGGCCCAGCGCGACCGTCTGGATGAACTGCTGCTGATCAGCTTCGAT
CCGTTCGGCATGGTGGTGGAGGGCGTGACCCTGGAACTGGCGGGAGAAGCTCATGCATAA
Translation:
MLIQAVGVNLPPSYVCLEGPLGGERPRAQGDEMLMQRLLPAVREALDEAAVKPEEIDLIVGLALSPDHLIEN
RDIMAPKIGHPLQKILGANRAHVFDLTDSSLARALYVVDTLASDQGYRNVLVVRGESSQGLEVDSESGFALA
DGALALLCRPTGKAAFRRGALGGDPAQEWLPLSIPLNTDIRQVGDVKGHLNLPAQPGLPEAVRAGFTRLAGD
FPQLNWVREEWFGQGRPDGRCLGPFELASQLRAAQRDRLDELLLISFDPFGMVVEGVTLELAGEAHA*
AnnotationID:2755GeneID:2747
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:07
Gene Name:pqsB
Confidence Code:1
GeneProduct:Homologous to beta-keto-acyl-acyl-carrier protein synthase
Cell Localization:()
Synonyms:PA0997
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0332
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]
        CD-Length = 323 residues,  87.6% aligned
        Score =  148 bits (374), Expect = 9e-37






   
Genomic Context:
part of pqsABCDE operon 






   
Comment:


















    ReferenceID:5497




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32100




  
Author/Investigator(s):
        Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.





  
Title:
        Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.




  
PubMed:
        12426334



MedLine:
        




    
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2747
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4481
                           PA0997_tr
                           translation of PA0997
                           283
                           99.64
                           99.99
                           0
                           1454.0
     

     
     
129659
                           gb|AAG04386.1|AE004532_10
                           (AE004532) Homologous to beta-keto-acyl-acyl-carrier protein synthase [Pseudomonas aeruginosa PAO1]
                           283
                           99.64
                           99.99
                           0
                           1454.0
     

     






      

          
GC ORFID: 45749How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0997Glimmer Score: 

          
Start: 383985Stop: 384836

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0997 translation of PA0997Homolog Bit Score 564.0

          
Other Homologs:  t_PA0997 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGATTCAGGCTGTGGGGGTGAACCTGCCCCCATCCTATGTGTGTCTGGAGGGGCCGCTGGGAGGCGAA 
CGCCCTCGCGCCCAGGGCGACGAGATGCTGATGCAGCGCTTGCTGCCGGCGGTTCGCGAAGCCCTGGACGAG 
GCGGCGGTCAAGCCCGAGGAGATCGACCTGATCGTCGGCCTCGCCCTGTCTCCCGACCATCTGATCGAGAAC 
CGCGACATCATGGCGCCGAAGATCGGCCATCCGTTGCAGAAGATCCTCGGCGCGAATCGCGCCCATGTCTTC 
GACCTCACCGACTCGAGCCTGGCTCGCGCCCTCTACGTGGTCGATACCCTCGCCAGCGACCAGGGCTATCGC 
AACGTCCTGGTCGTGCGCGGCGAATCCAGCCAGGGATTGGAAGTGGACAGCGAGTCTGGCTTCGCCCTTGCC 
GACGGCGCCCTGGCGCTGCTCTGCCGGCCGACCGGCAAGGCCGCGTTCCGTCGCGGTGCGCTGGGCGGTGAT 
CCGGCGCAGGAATGGCTGCCGCTGAGCATTCCGCTGAATACCGATATTCGCCAGGTAGGCGACGTCAAGGGA 
CACCTCAACCTGCCGGCCCAACCTGGATTGCCCGAAGCGGTACGCGCCGGATTCACCCGTTTGGCCGGGGAC 
TTCCCGCAACTGAACTGGGTGCGCGAGGAATGGTTCGGCCAGGGACGGCCCGATGGTCGTTGCCTGGGGCCG 
TTCGAACTGGCGTCGCAACTGCGCGCGGCCCAGCGCGACCGTCTGGATGAACTGCTGCTGATCAGCTTCGAT 
CCGTTCGGCATGGTGGTGGAGGGCGTGACCCTGGAACTGGCGGGAGAAGCTCATGCATAA