ViewGene
Locus Name:
GeneID:
Location:

GeneID:2745
TrivialName: PA14_71780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71780
PAO1 Ortholog Locus:PA5438
Sequence Length:882
Protein Length:293
Start: 6394976
Stop: 6394095
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08823.1|AE004956_7 (AE004956) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 293/293 (100%), Positives = 293/293 (100%)
Sequence:
GTGAACCTGCTGCAGCACATAGCCCAGTCCCGCCAACAGCTCCGCAAGTCGGAACTCAAGGTCGCCGATCAC
GTTCTCAACGATCCGGCGTCGGTCATGCACAGCTCCATGGCCGAACTGGCCCATGGGGTCGGGGTCAGCGAG
CCGACCATCGTGCGTTTCTGCCGCGCCATCGGCTGCAGCGGCTTCCAGGACCTCAAGCTGAAGCTGGCGCAG
AGCCTGGCGGCCGGCGCCAGCTTCGGCCAGTTCTCGATCCACGAGAGCGACTCGGTGGCCGACTTCAGCCTG
AAGATCTTCGACACCACGCTGCACAGCCTGATGGAAGTCCGCGAGCACCTGGACACCCACGCCCTGGAGCGC
GCCATCGCCGCCATCGCCCACGCCCAGCGCGTGGAGTTCTACGGCTTCGGCGCTTCCGGCGCGGTGGCCTCG
GATGCCCAGCACAAGTTCTTCCGCCTGCTGCTGTCGGCGGCGGCCTACTCCGACCCGCACATGCAGGCGATG
TCGGCGGTGACCCTCAAGCCCAGCGACGTGGCCATCTGCATTTCCCAGTCGGGTCGCTCGAAGGACCTGCTG
ATCACCGCCAACCTGGTCCGCGAGGCCGGCGCCACGCTGATCACCCTGTGCCCGAGCCAGACCCCGCTGGCC
GACCTGGCCACGGTCAACCTGGCGATCGACGTGCACGAGGACACCGACATCTACACCCCGCTGACCTCGCGC
ATCGCCCACCTGGTGGTGATCGACGTGCTGGCGATGGGCGTGGCCATGGCCCGCGGCCCGGACCTGGTCAAC
CACCTCAAGAGCGTCAAGCGCAGCCTGCGCAGCCTGCGCCTGTCGCCGAAGGTGATGAAGAACCAGGAAGAG
CGCGGCGAGCCGTCCTGA
Translation:
MNLLQHIAQSRQQLRKSELKVADHVLNDPASVMHSSMAELAHGVGVSEPTIVRFCRAIGCSGFQDLKLKLAQ
SLAAGASFGQFSIHESDSVADFSLKIFDTTLHSLMEVREHLDTHALERAIAAIAHAQRVEFYGFGASGAVAS
DAQHKFFRLLLSAAAYSDPHMQAMSAVTLKPSDVAICISQSGRSKDLLITANLVREAGATLITLCPSQTPLA
DLATVNLAIDVHEDTDIYTPLTSRIAHLVVIDVLAMGVAMARGPDLVNHLKSVKRSLRSLRLSPKVMKNQEE
RGEPS*
AnnotationID:2753GeneID:2745
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:03
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, RpiR family
Cell Localization:()
Synonyms:PA5438
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1737
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70915.1|AE016735_8 (AE016794) transcriptional regulator, RpiR family [Pseudomonas
           putida KT2440]
          Length = 288

 Score =  499 bits (1284), Expect = e-140
 Identities = 254/288 (88%), Positives = 274/288 (95%)

>gb|AAO58934.1| (AE016876) transcriptional regulator, RpiR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 288

 Score =  496 bits (1276), Expect = e-140
 Identities = 251/288 (87%), Positives = 275/288 (95%)






 
Structural Features:
COG1737, RpiR, Transcriptional regulators [Transcription]
CD-Length = 281 residues,  99.3% aligned
Score =  244 bits (624), Expect = 8e-66
Identities = 116/279 (41%), Positives = 159/279 (56%), Gaps = 1/279 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14665




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34653




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2745_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2745
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4478
                           PA5438_tr
                           translation of PA5438
                           293
                           99.99
                           99.99
                           0
                           1456.0
     

     
     
129623
                           gb|AAG08823.1|AE004956_7
                           (AE004956) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           293
                           99.65
                           99.99
                           0
                           1453.0
     

     
     
129624
                           gb|AAN70915.1|AE016735_8
                           (AE016794) transcriptional regulator, RpiR family [Pseudomonas putida KT2440]
                           293
                           86.34
                           93.51
                           5
                           1280.0
     

     
     
129625
                           gb|AAO58934.1|
                           (AE016876) transcriptional regulator, RpiR family [Pseudomonas syringae pv. tomato str. DC3000]
                           293
                           85.32
                           93.85
                           5
                           1272.0
     

     
     
129626
                           gb|AAQ57827.1|
                           (AE016910) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           293
                           43.34
                           61.09
                           11
                           633.0
     

     






      

          
GC ORFID: 45747How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5438Glimmer Score: 

          
Start: 5658665Stop: 5657784

          
Length: 882


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5438 translation of PA5438Homolog Bit Score 565.0

          
Other Homologs:  t_PA3184 (ORF: BLASTX 225.0), psyr_15may02_Scaffold3_revised_gene4952 (ORF: BLASTX 211.0), t_PA5438 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCTGCTGCAGCACATAGCCCAGTCCCGCCAACAGCTCCGCAAGTCGGAACTCAAGGTCGCCGATCAC 
GTTCTCAACGATCCGGCGTCGGTCATGCACAGCTCCATGGCCGAACTGGCCCATGGGGTCGGGGTCAGCGAG 
CCGACCATCGTGCGTTTCTGCCGCGCCATCGGCTGCAGCGGCTTCCAGGACCTCAAGCTGAAGCTGGCGCAG 
AGCCTGGCGGCCGGCGCCAGCTTCGGCCAGTTCTCGATCCACGAGAGCGACTCGGTGGCCGACTTCAGCCTG 
AAGATCTTCGACACCACGCTGCACAGCCTGATGGAAGTCCGCGAGCACCTGGACACCCACGCCCTGGAGCGC 
GCCATCGCCGCCATCGCCCACGCCCAGCGCGTGGAGTTCTACGGCTTCGGCGCTTCCGGCGCGGTGGCCTCG 
GATGCCCAGCACAAGTTCTTCCGCCTGCTGCTGTCGGCGGCGGCCTACTCCGACCCGCACATGCAGGCGATG 
TCGGCGGTGACCCTCAAGCCCAGCGACGTGGCCATCTGCATTTCCCAGTCGGGTCGCTCGAAGGACCTGCTG 
ATCACCGCCAACCTGGTCCGCGAGGCCGGCGCCACGCTGATCACCCTGTGCCCGAGCCAGACCCCGCTGGCC 
GACCTGGCCACGGTCAACCTGGCGATCGACGTGCACGAGGACACCGACATCTACACCCCGCTGACCTCGCGC 
ATCGCCCACCTGGTGGTGATCGACGTGCTGGCGATGGGCGTGGCCATGGCCCGCGGCCCGGACCTGGTCAAC 
CACCTCAAGAGCGTCAAGCGCAGCCTGCGCAGCCTGCGCCTGTCGCCGAAGGTGATGAAGAACCAGGAAGAG 
CGCGGCGAGCCGTCCTGA