ViewGene
Locus Name:
GeneID:
Location:

GeneID:2742
TrivialName: PA14_22590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22590
PAO1 Ortholog Locus:PA3219
Sequence Length:813
Protein Length:270
Start: 1965017
Stop: 1965829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06607.1|AE004745_4 (AE004745) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 270/270 (100%), Positives = 270/270 (100%)
Sequence:
ATGAGCACCGCGCAACGCTTCACCTCGAACCGCAAGCAGCGGGTTCGGACCCTGTGGATCTCGGATGTCCAC
CTGGGGACGCGGGATTGCCAGGCCGAACACCTGGCGGCGTTCCTCAAGCGCTACCACGCCGATCGCATCTAC
CTGGTGGGCGACATCATCGACGGCTGGAAGCTGCGCGGCGGCATCTACTGGCCGCAGGCGCACACCAACGTG
ATCCGCCGCCTGCTCACCCTGAGCAAGCGCGGCACCGAGGTGATCTACGTCACCGGCAACCATGACGAATTC
CTGCGCCGCTATTCGAGCCTGATCCTCGGCAACATCCGCCTGGTCGACGAGGCGGTGCACAGTACCGCCGAC
GGCCGCAAGCTGCTGGTGATACACGGCGACCAGTTCGACGTGATCACCCGCTACCACCGCTGGCTGGCGTTC
CTCGGCGATTCCGCCTACGAGTTCACCCTGCTCCTCAACCGTTGGCTGAACCACTGGCGGCGGCGCTGGGGC
TACGGCTACTGGTCGCTGTCGGCGTACCTCAAGCACAAGGTCAAGACCGCGGTGAACTTCATCAGCGACTTC
GAGGAAGCCATCGCCCACGAGTGCCACAAGCGCGGGCTCGACGGGGTGGTCTGCGGGCACATCCACCATGCC
GAGATCCGCCGCATCGAGGGCGTCGATTACCTCAACTGCGGCGACTGGGTAGAATCCTGCACGGCGCTGATC
GAACATTGGGACGGCAGCATCCAGCTCTACCGCCTGGCCGAGGAGCAGGCGCGGCTGGCGGCGCAGGCCGCG
GCGGTCGAGCCGGCGGCATGA
Translation:
MSTAQRFTSNRKQRVRTLWISDVHLGTRDCQAEHLAAFLKRYHADRIYLVGDIIDGWKLRGGIYWPQAHTNV
IRRLLTLSKRGTEVIYVTGNHDEFLRRYSSLILGNIRLVDEAVHSTADGRKLLVIHGDQFDVITRYHRWLAF
LGDSAYEFTLLLNRWLNHWRRRWGYGYWSLSAYLKHKVKTAVNFISDFEEAIAHECHKRGLDGVVCGHIHHA
EIRRIEGVDYLNCGDWVESCTALIEHWDGSIQLYRLAEEQARLAAQAAAVEPAA*
AnnotationID:2750GeneID:2742
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 10:10:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3219
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55319.1| (AE016862) Ser/Thr protein phosphatase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 273

 Score =  479 bits (1233), Expect = e-135
 Identities = 226/270 (83%), Positives = 248/270 (91%), Gaps = 1/270 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22631




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32326




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2742_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2742
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4475
                           PA3219_tr
                           translation of PA3219
                           270
                           99.99
                           99.99
                           0
                           1455.0
     

     
     
129547
                           gb|AAG06607.1|AE004745_4
                           (AE004745) hypothetical protein PA3219 [Pseudomonas aeruginosa PAO1]
                           270
                           99.99
                           99.99
                           0
                           1455.0
     

     
     
129549
                           gb|AAN70084.1|AE016648_2
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           270
                           83.70
                           89.25
                           5
                           1224.0
     

     
     
129548
                           gb|AAO55319.1|
                           (AE016862) Ser/Thr protein phosphatase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           274
                           82.48
                           90.51
                           5
                           1235.0
     

     
     
129550
                           gb|AAK25306.1|
                           (AE005996) conserved hypothetical protein [Caulobacter crescentus CB15]
                           288
                           49.30
                           67.70
                           25
                           756.0
     

     






      

          
GC ORFID: 45744How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3219Glimmer Score: 

          
Start: 2988914Stop: 2988102

          
Length: 813


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3219 translation of PA3219Homolog Bit Score 565.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7775 (ORF: BLASTX 479.0), t_PA3219 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCACCGCGCAACGCTTCACCTCGAACCGCAAGCAGCGGGTTCGGACCCTGTGGATCTCGGATGTCCAC 
CTGGGGACGCGGGATTGCCAGGCCGAACACCTGGCGGCGTTCCTCAAGCGCTACCACGCCGATCGCATCTAC 
CTGGTGGGCGACATCATCGACGGCTGGAAGCTGCGCGGCGGCATCTACTGGCCGCAGGCGCACACCAACGTG 
ATCCGCCGCCTGCTCACCCTGAGCAAGCGCGGCACCGAGGTGATCTACGTCACCGGCAACCATGACGAATTC 
CTGCGCCGCTATTCGAGCCTGATCCTCGGCAACATCCGCCTGGTCGACGAGGCGGTGCACAGTACCGCCGAC 
GGCCGCAAGCTGCTGGTGATACACGGCGACCAGTTCGACGTGATCACCCGCTACCACCGCTGGCTGGCGTTC 
CTCGGCGATTCCGCCTACGAGTTCACCCTGCTCCTCAACCGTTGGCTGAACCACTGGCGGCGGCGCTGGGGC 
TACGGCTACTGGTCGCTGTCGGCGTACCTCAAGCACAAGGTCAAGACCGCGGTGAACTTCATCAGCGACTTC 
GAGGAAGCCATCGCCCACGAGTGCCACAAGCGCGGGCTCGACGGGGTGGTCTGCGGGCACATCCACCATGCC 
GAGATCCGCCGCATCGAGGGCGTCGATTACCTCAACTGCGGCGACTGGGTAGAATCCTGCACGGCGCTGATC 
GAACATTGGGACGGCAGCATCCAGCTCTACCGCCTGGCCGAGGAGCAGGCGCGGCTGGCGGCGCAGGCCGCG 
GCGGTCGAGCCGGCGGCATGA