ViewGene
Locus Name:
GeneID:
Location:

GeneID:2741
TrivialName: PA14_36990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36990
PAO1 Ortholog Locus:PA2133
Sequence Length:858
Protein Length:285
Start: 3294857
Stop: 3294000
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05521.1|AE004640_10 (AE004640) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 283/285 (99%), Positives = 284/285 (99%)
Sequence:
GTGAACAGTTCCCCACAGGCTCGCCAGCACGAGCACCCGCCGGCCGTTGCCGCCTCCCTGGCCGGCGACCTG
CGCCTGGCCCGGCGTTTCCAGGCCGCCCTGGCGCGCGGTCGGGTGCGCCTGGACTGGCAGGCCGTACGGCAT
GCCGGGCATCCAGAATGGGAGCCGCTCTACCGGGAAACCCTGCTCAGGGTCACGGCCGCCAGCGGCGAGCCG
CCGTTGCCGACCCAGGAACTGATCCTGGCGCTGGAGCGGCTCGGCCTGATACGCCTGCTCGATCGCTGCGTG
CTGGGCACGGTCCTCGACCGGCTGAACGCCGAGCCTACCTTGCGCCTGGCCTGCAACCTGTCGCGCCAGAGC
GCGGCGATGGATGCCTGGTGGGAAGCCGTCTGCCGATGGCTGGCCGCCCGTCCGCAGGTGGCACGGCGGCTG
ACGCTGGAGCTGACCGAGACCGCCGTGGGCGAGAGAGTCGCGACCCGGGAGTTCATCCGACGCCTGCGCGAA
CATGGCGTGCGCATCGCGATAGATGACTTCGGCGCGGCGCACAACAACCTGGACTTCGTCCTCGATGCCCGT
CCCGACGTGATCAAGATCGATTGCCGGTATACCCGCGAAGCACGTCGCTCGGCGAAGGGCGCCGAAGTGCTG
CGCCACCTGCTAGCCCTGTGCCGCGAACTGGCGCCCTGCGTGGTCCTGGAAGGTCTCGAGGAGGACGATGCG
TTCGCCCGGCTGCCGACCGGGGACGTCTATCTCCAGGGCAACGCGATCGCGCCGCCGATGCGGGTCGAACCG
CCGCTGTCCGTACGCCGGCCGAAGAGCCGGGCGCGGATCGAGGCGCTGGCGAGCCGCCAGGGGTGA
Translation:
MNSSPQARQHEHPPAVAASLAGDLRLARRFQAALARGRVRLDWQAVRHAGHPEWEPLYRETLLRVTAASGEP
PLPTQELILALERLGLIRLLDRCVLGTVLDRLNAEPTLRLACNLSRQSAAMDAWWEAVCRWLAARPQVARRL
TLELTETAVGERVATREFIRRLREHGVRIAIDDFGAAHNNLDFVLDARPDVIKIDCRYTREARRSAKGAEVL
RHLLALCRELAPCVVLEGLEEDDAFARLPTGDVYLQGNAIAPPMRVEPPLSVRRPKSRARIEALASRQG*
AnnotationID:2749GeneID:2741
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 10:10:47
Gene Name:
Confidence Code:3
GeneProduct:putative EAL domain protein
Cell Localization:()
Synonyms:PA2133
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2200,pfam00563
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
CD-Length = 256 residues,  99.6% aligned
Score =  145 bits (366), Expect = 8e-36
Identities = 79/258 (30%), Positives = 117/258 (45%), Gaps = 8/258 (3%)

pfam00563, EAL, EAL domain. 
CD-Length = 247 residues,  98.8% aligned
Score =  118 bits (297), Expect = 9e-28
Identities = 77/247 (31%), Positives = 111/247 (44%), Gaps = 10/247 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14663




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22629




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32591




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2741_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2741
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4474
                           PA2133_tr
                           translation of PA2133
                           285
                           99.29
                           99.64
                           0
                           1456.0
     

     
     
129546
                           gb|AAG05521.1|AE004640_10
                           (AE004640) hypothetical protein PA2133 [Pseudomonas aeruginosa PAO1]
                           285
                           98.94
                           99.64
                           0
                           1453.0
     

     






      

          
GC ORFID: 45743How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2133Glimmer Score: 

          
Start: 1659057Stop: 1659914

          
Length: 858


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2133 translation of PA2133Homolog Bit Score 565.0

          
Other Homologs:  t_PA2133 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACAGTTCCCCACAGGCTCGCCAGCACGAGCACCCGCCGGCCGTTGCCGCCTCCCTGGCCGGCGACCTG 
CGCCTGGCCCGGCGTTTCCAGGCCGCCCTGGCGCGCGGTCGGGTGCGCCTGGACTGGCAGGCCGTACGGCAT 
GCCGGGCATCCAGAATGGGAGCCGCTCTACCGGGAAACCCTGCTCAGGGTCACGGCCGCCAGCGGCGAGCCG 
CCGTTGCCGACCCAGGAACTGATCCTGGCGCTGGAGCGGCTCGGCCTGATACGCCTGCTCGATCGCTGCGTG 
CTGGGCACGGTCCTCGACCGGCTGAACGCCGAGCCTACCTTGCGCCTGGCCTGCAACCTGTCGCGCCAGAGC 
GCGGCGATGGATGCCTGGTGGGAAGCCGTCTGCCGATGGCTGGCCGCCCGTCCGCAGGTGGCACGGCGGCTG 
ACGCTGGAGCTGACCGAGACCGCCGTGGGCGAGAGAGTCGCGACCCGGGAGTTCATCCGACGCCTGCGCGAA 
CATGGCGTGCGCATCGCGATAGATGACTTCGGCGCGGCGCACAACAACCTGGACTTCGTCCTCGATGCCCGT 
CCCGACGTGATCAAGATCGATTGCCGGTATACCCGCGAAGCACGTCGCTCGGCGAAGGGCGCCGAAGTGCTG 
CGCCACCTGCTAGCCCTGTGCCGCGAACTGGCGCCCTGCGTGGTCCTGGAAGGTCTCGAGGAGGACGATGCG 
TTCGCCCGGCTGCCGACCGGGGACGTCTATCTCCAGGGCAACGCGATCGCGCCGCCGATGCGGGTCGAACCG 
CCGCTGTCCGTACGCCGGCCGAAGAGCCGGGCGCGGATCGAGGCGCTGGCGAGCCGCCAGGGGTGA