ViewGene
Locus Name:
GeneID:
Location:

GeneID:2737
TrivialName: PA14_45070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45070
PAO1 Ortholog Locus:PA1496
Sequence Length:852
Protein Length:283
Start: 4020099
Stop: 4020950
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04885.1|AE004578_7 (AE004578) probable potassium channel [Pseudomonas aeruginosa PAO1]
Identities = 283/283 (100%), Positives = 283/283 (100%)
Sequence:
ATGAGCGCACCCGACAGCTGGCGCGAACGCCTCTACATCGTCATCTTCCAGACCGACACCCGCGACGGCCGG
CGCTTCGACAGCGCGCTGCTGCTGGTGATCCTGGCCAGCCTGCTGGTAGTGATGATCGACAGCATCGACGAG
ATCCACCAGGACTACGGCGACCTGCTGGCCTACATCGAATGGGGCTTCACCGGCATCTTCCTGGTGGAATAC
CTGCTGCGCCTGTACTGCTCGCCCAAGCCGCTGCGCTATGCCTTCAGCTTCTACGGCCTGGTCGACCTGCTG
GCGATCCTCCCCGGCTTCCTCGCCCTGCTCTACCCCGACGCCCAGTACCTGCTGATCGTCCGGGTGATACGC
ATGCTGCGGATCTTCCGCGTGCTCAAGCTGCGCCAGTACCTGAGCCAGGCCAATTTCCTGCTCACCGCCCTG
CGCGGCAGCAAGCAGAAGATCATCGTGTTCTTCCTCACCGTGATGACCCTGGTCACCGTGTTCGGCGCGCTG
ATGTACGTGGTCGAAGGCCCGGAGCACGGTTTCACCAGCATCCCCCGCGGCATCTACTGGGCGATCGTCACC
CTCACCACGGTCGGCTTCGGCGACATCACCCCGAAGACCCCGCTCGGCCAGGCCATCGCCAGCCTGGTGATG
CTCACCGGCTACTCGATCATCGCGGTGCCCACCGGGATCTTCACCGCCGAACTCGCCACCGCGATGCGCCAG
GACCCGGCCAACCTGTTGCAGCGGGATTGCCCGGTGTGCCGCAAGGCGACCCACGAAGTGCAGGCGGCATTC
TGCTGCCGCTGCGGCAACCCGTTGTTCCCTCGCGAGGAAGGCAGCCATGGGAAGTCTTGA
Translation:
MSAPDSWRERLYIVIFQTDTRDGRRFDSALLLVILASLLVVMIDSIDEIHQDYGDLLAYIEWGFTGIFLVEY
LLRLYCSPKPLRYAFSFYGLVDLLAILPGFLALLYPDAQYLLIVRVIRMLRIFRVLKLRQYLSQANFLLTAL
RGSKQKIIVFFLTVMTLVTVFGALMYVVEGPEHGFTSIPRGIYWAIVTLTTVGFGDITPKTPLGQAIASLVM
LTGYSIIAVPTGIFTAELATAMRQDPANLLQRDCPVCRKATHEVQAAFCCRCGNPLFPREEGSHGKS*
AnnotationID:2745GeneID:2737
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 06:06:06
Gene Name:
Confidence Code:3
GeneProduct:putative potassium channel
Cell Localization:()
Synonyms:PA1496
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ion transport protein
Functional Category Confidence Code:5
COGs:pfam00520
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69884.1|AE016627_6 (AE016790) cation transporter, VIC family [Pseudomonas putida
           KT2440]
          Length = 273

 Score =  424 bits (1090), Expect = e-118
 Identities = 210/275 (76%), Positives = 233/275 (84%), Gaps = 3/275 (1%)

>gb|AAO57096.1| (AE016869) ion transport protein, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 277

 Score =  395 bits (1014), Expect = e-109
 Identities = 197/272 (72%), Positives = 227/272 (83%), Gaps = 3/272 (1%)

>gb|AAM32885.1| (AE013577) Potassium channel protein [Methanosarcina mazei Goe1]
          Length = 279

 Score =  309 bits (791), Expect = 1e-83
 Identities = 150/268 (55%), Positives = 198/268 (73%), Gaps = 4/268 (1%)








 
Structural Features:
pfam00520, Ion_trans, Ion transport protein.
CD-Length = 194 residues,  94.8% aligned
Score = 78.1 bits (192), Expect = 1e-15
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 14/184 (7%







   
Genomic Context:






   
Comment:


















    ReferenceID:5477




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22621




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37336




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2737_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2737
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4470
                           PA1496_tr
                           translation of PA1496
                           283
                           99.99
                           99.99
                           0
                           1455.0
     

     
     
129356
                           gb|AAG04885.1|AE004578_7
                           (AE004578) probable potassium channel [Pseudomonas aeruginosa PAO1]
                           283
                           99.99
                           99.99
                           0
                           1455.0
     

     
     
129357
                           gb|AAN69884.1|AE016627_6
                           (AE016790) cation transporter, VIC family [Pseudomonas putida KT2440]
                           283
                           74.20
                           82.33
                           10
                           1092.0
     

     
     
129358
                           gb|AAO57096.1|
                           (AE016869) ion transport protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           69.96
                           80.56
                           6
                           1013.0
     

     
     
129359
                           gb|AAM32885.1|
                           (AE013577) Potassium channel protein [Methanosarcina mazei Goe1]
                           290
                           52.41
                           69.31
                           18
                           790.0
     

     






      

          
GC ORFID: 45739How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1496Glimmer Score: 

          
Start: 933810Stop: 932959

          
Length: 852


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1496 translation of PA1496Homolog Bit Score 565.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2142 (ORF: BLASTX 316.0), t_PA1496 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCACCCGACAGCTGGCGCGAACGCCTCTACATCGTCATCTTCCAGACCGACACCCGCGACGGCCGG 
CGCTTCGACAGCGCGCTGCTGCTGGTGATCCTGGCCAGCCTGCTGGTAGTGATGATCGACAGCATCGACGAG 
ATCCACCAGGACTACGGCGACCTGCTGGCCTACATCGAATGGGGCTTCACCGGCATCTTCCTGGTGGAATAC 
CTGCTGCGCCTGTACTGCTCGCCCAAGCCGCTGCGCTATGCCTTCAGCTTCTACGGCCTGGTCGACCTGCTG 
GCGATCCTCCCCGGCTTCCTCGCCCTGCTCTACCCCGACGCCCAGTACCTGCTGATCGTCCGGGTGATACGC 
ATGCTGCGGATCTTCCGCGTGCTCAAGCTGCGCCAGTACCTGAGCCAGGCCAATTTCCTGCTCACCGCCCTG 
CGCGGCAGCAAGCAGAAGATCATCGTGTTCTTCCTCACCGTGATGACCCTGGTCACCGTGTTCGGCGCGCTG 
ATGTACGTGGTCGAAGGCCCGGAGCACGGTTTCACCAGCATCCCCCGCGGCATCTACTGGGCGATCGTCACC 
CTCACCACGGTCGGCTTCGGCGACATCACCCCGAAGACCCCGCTCGGCCAGGCCATCGCCAGCCTGGTGATG 
CTCACCGGCTACTCGATCATCGCGGTGCCCACCGGGATCTTCACCGCCGAACTCGCCACCGCGATGCGCCAG 
GACCCGGCCAACCTGTTGCAGCGGGATTGCCCGGTGTGCCGCAAGGCGACCCACGAAGTGCAGGCGGCATTC 
TGCTGCCGCTGCGGCAACCCGTTGTTCCCTCGCGAGGAAGGCAGCCATGGGAAGTCTTGA