ViewGene
Locus Name:
GeneID:
Location:

GeneID:2736
TrivialName: PA14_54600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54600
PAO1 Ortholog Locus:PA0749
Sequence Length:822
Protein Length:273
Start: 4840871
Stop: 4840050
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04138.1|AE004510_2 (AE004510) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 270/273 (98%), Positives = 272/273 (99%)
Sequence:
ATGCGCAAACCCCTATCGCTCTACCACCCCTGGCTCTACTGGCTGCGGGTCTGGCAACGACGTCTCTGGCGG
CACTGCCGCTGGCGTCTTGGCGGCCGTCGCTACGTGCGGCTGCCATCGGTCGACGAGCGCCTGCCGTACCGC
TACATCAAGCACACCTCGAAGTTGATCCGCCGCCTCGGCGACAGCGACCTCGCCCTGCAACGCAACAAGGTG
GTCAACCTGCGCCTGGCGGTGGACTGCATGAACGGCGTGCGCATCGGCCCCGGCGAGTACTTCTCGTTCTGC
CGGCTGGTCGGTCGGCCCAGCGCCCGGCGTGGCTTCGTCGAAGGTATGGAGTTGTCCTTCGGCGAGGCGCGC
AGCGGAATCGGCGGCGGCATCTGCCAACTGAGCAACCTGATCCACTGGATGGCCCTGCATTCGCCGCTGCGC
GTGGTGGAGCGGGCCAACCACAGCTTCGACCCGTTTCCCGACGAGGGACGGATCCTGCCGTTCGGCTCGGGC
GCGGCGATCTTCTACAACTTCATCGACCTGGTGCTGCACAATCCGACGGCGGATACCTTCCAGTTGCGCTTC
CATATCGCCGCCCACCAACTGGAAGGCGAACTGCTGTGCAGCGCGCCGCGCCCTGTGCGCTACCACGTCTAC
GAGAGGGCCCAGCGTTTTGTCCGCGACGGCGAGGCAGTGCTGAGGCTCAACGAGATCTGGCGCGACATCCGG
GAAAAGGGCCAGGCCGGCACCCTGCTGGCCAGCGAGTGCCTGTACCGCAACCGGGTGCGCGTGAAGTATCCG
CTGGAAGAGGCCCGCCTGTCCCGAGATTGA
Translation:
MRKPLSLYHPWLYWLRVWQRRLWRHCRWRLGGRRYVRLPSVDERLPYRYIKHTSKLIRRLGDSDLALQRNKV
VNLRLAVDCMNGVRIGPGEYFSFCRLVGRPSARRGFVEGMELSFGEARSGIGGGICQLSNLIHWMALHSPLR
VVERANHSFDPFPDEGRILPFGSGAAIFYNFIDLVLHNPTADTFQLRFHIAAHQLEGELLCSAPRPVRYHVY
ERAQRFVRDGEAVLRLNEIWRDIREKGQAGTLLASECLYRNRVRVKYPLEEARLSRD*
AnnotationID:2744GeneID:2736
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 12:12:05
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0749
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2720, pfam04294
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2720, Uncharacterized vancomycin resistance protei..., Score: 335, 7e-93
pfam04294, VanW, VanW like protein. Family members include van..., Score: 211, 2e-55







   
Genomic Context:






   
Comment:


















    ReferenceID:5475




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22619




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2736
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4469
                           PA0749_tr
                           translation of PA0749
                           273
                           98.90
                           99.63
                           0
                           1456.0
     

     
     
129352
                           gb|AAG04138.1|AE004510_2
                           (AE004510) hypothetical protein PA0749 [Pseudomonas aeruginosa PAO1]
                           273
                           98.90
                           99.63
                           0
                           1456.0
     

     
     
129354
                           gb|AAQ65725.1|
                           (AE017173) conserved domain protein [Porphyromonas gingivalis W83]
                           316
                           34.49
                           47.15
                           60
                           414.0
     

     
     
129355
                           emb|CAE21129.1|
                           (BX572097) conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]
                           292
                           33.56
                           46.23
                           41
                           390.0
     

     
     
129353
                           gb|AAP09932.1|
                           (AE017007) Vancomycin B-type resistance protein vanW [Bacillus cereus ATCC 14579]
                           310
                           32.58
                           47.41
                           71
                           484.0
     

     






      

          
GC ORFID: 45738How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0749Glimmer Score: 

          
Start: 113036Stop: 113857

          
Length: 822


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0749 translation of PA0749Homolog Bit Score 565.0

          
Other Homologs:  t_PA0749 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAAACCCCTATCGCTCTACCACCCCTGGCTCTACTGGCTGCGGGTCTGGCAACGACGTCTCTGGCGG 
CACTGCCGCTGGCGTCTTGGCGGCCGTCGCTACGTGCGGCTGCCATCGGTCGACGAGCGCCTGCCGTACCGC 
TACATCAAGCACACCTCGAAGTTGATCCGCCGCCTCGGCGACAGCGACCTCGCCCTGCAACGCAACAAGGTG 
GTCAACCTGCGCCTGGCGGTGGACTGCATGAACGGCGTGCGCATCGGCCCCGGCGAGTACTTCTCGTTCTGC 
CGGCTGGTCGGTCGGCCCAGCGCCCGGCGTGGCTTCGTCGAAGGTATGGAGTTGTCCTTCGGCGAGGCGCGC 
AGCGGAATCGGCGGCGGCATCTGCCAACTGAGCAACCTGATCCACTGGATGGCCCTGCATTCGCCGCTGCGC 
GTGGTGGAGCGGGCCAACCACAGCTTCGACCCGTTTCCCGACGAGGGACGGATCCTGCCGTTCGGCTCGGGC 
GCGGCGATCTTCTACAACTTCATCGACCTGGTGCTGCACAATCCGACGGCGGATACCTTCCAGTTGCGCTTC 
CATATCGCCGCCCACCAACTGGAAGGCGAACTGCTGTGCAGCGCGCCGCGCCCTGTGCGCTACCACGTCTAC 
GAGAGGGCCCAGCGTTTTGTCCGCGACGGCGAGGCAGTGCTGAGGCTCAACGAGATCTGGCGCGACATCCGG 
GAAAAGGGCCAGGCCGGCACCCTGCTGGCCAGCGAGTGCCTGTACCGCAACCGGGTGCGCGTGAAGTATCCG 
CTGGAAGAGGCCCGCCTGTCCCGAGATTGA