ViewGene
Locus Name:
GeneID:
Location:

GeneID:2734
TrivialName: PA14_55720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55720
PAO1 Ortholog Locus:PA4287
Sequence Length:891
Protein Length:296
Start: 4973883
Stop: 4972993
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07675.1|AE004845_1 (AE004845) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 296/296 (100%), Positives = 296/296 (100%)
Sequence:
ATGCAATACCTGTTTCCCCTGCTGGCCGTGTTCATCTGGGCCGGCAACACCGTCGTCAACAAGCTCGCCGTG
GGGATCATCCAGCCCGCCGAGATCGGTTTCTTCCGCTGGCTGCTGGTCGGCCTGGCGCTGACGCCCTTCATG
CTCGGCCCGGTGCTGCGCAACCGCCGCTACATCCTCGCCAACCTCGGCAAGTTCGTGGTCCTCGGCCTGCTC
GGCATGGCCGTCTACCAGAGCCTGGCCTACTACGCGGCGGCGCTGACCAGCGCCACCAACATGGGCATCATC
CTGTCGCTGATGCCCCTGATGTCGCTGGGCCTGGCCAGCAGCATCCTGGCCCACCGGCTGAACGCCGGGGCG
CTGCTCGGCGCGCTGGTGTCGCTGGCCGGCGTGGTGCTGGTGATTTCCCAGGGCCATCTCGGCGCTTTGCTG
GAGCATGGAGTGAACCTCGGCGACGCGATGATGATCGTCGCCACCCTGGCCTATGCGGTGTACAGCGTGCTG
CTGAAGAAATGGAGCCTGAAGCTGCCGGCCATGCAACTGCTCTACCTGCAGGTGCTGGTGGCGATCCTCGCC
CTGCTGCCGCTGTACCTGCTGTCGCCGCGCACCGGCCTGAACGCCGCCAACCTGCCGCTGGTGCTGTACGCC
GCGCTGTTCGCCTCGATCGTCGCCGCGCTGGCCTGGATGCACGGTGTCGCCCGTCTCGGGCCGAGCCGGATG
GCGCTGTTCTTCAACCTGCTGCCGATCATCACCGCCTGCATCGCCACCCTGGTGCTCGGCGAGCGCCTGACC
GTCCATCACCTGGTCGGCGGCGCGCTGACCCTGGCCGGGGTCCTGCTGGCCGAGTTCTGGCAGCGCCGCCCG
GCCCGCCTGCGCTCGGCAACCTGCTGA
Translation:
MQYLFPLLAVFIWAGNTVVNKLAVGIIQPAEIGFFRWLLVGLALTPFMLGPVLRNRRYILANLGKFVVLGLL
GMAVYQSLAYYAAALTSATNMGIILSLMPLMSLGLASSILAHRLNAGALLGALVSLAGVVLVISQGHLGALL
EHGVNLGDAMMIVATLAYAVYSVLLKKWSLKLPAMQLLYLQVLVAILALLPLYLLSPRTGLNAANLPLVLYA
ALFASIVAALAWMHGVARLGPSRMALFFNLLPIITACIATLVLGERLTVHHLVGGALTLAGVLLAEFWQRRP
ARLRSATC*
AnnotationID:2742GeneID:2734
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:54
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4287
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70422.1|AE016684_1 (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 293

 Score =  365 bits (936), Expect = e-100
 Identities = 187/284 (65%), Positives = 224/284 (78%)

>gb|AAO58330.1| (AE016873) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 293

 Score =  348 bits (894), Expect = 2e-95
 Identities = 174/284 (61%), Positives = 219/284 (77%)

>emb|CAE43500.1| (BX640420) putative membrane protein [Bordetella pertussis]
          Length = 288

 Score =  273 bits (699), Expect = 7e-73
 Identities = 144/289 (49%), Positives = 197/289 (68%), Gaps = 3/289 (1%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22615




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36650




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2734_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2734
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4467
                           PA4287_tr
                           translation of PA4287
                           296
                           99.99
                           99.99
                           0
                           1460.0
     

     
     
129317
                           gb|AAG07675.1|AE004845_1
                           (AE004845) hypothetical protein PA4287 [Pseudomonas aeruginosa PAO1]
                           296
                           99.99
                           99.99
                           0
                           1460.0
     

     
     
129318
                           gb|AAN70422.1|AE016684_1
                           (AE016792) membrane protein, putative [Pseudomonas putida KT2440]
                           296
                           64.52
                           77.02
                           3
                           935.0
     

     
     
129319
                           gb|AAO58330.1|
                           (AE016873) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           296
                           59.45
                           75.67
                           3
                           895.0
     

     
     
129320
                           emb|CAE43500.1|
                           (BX640420) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           296
                           48.98
                           66.55
                           8
                           700.0
     

     






      

          
GC ORFID: 45736How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4287Glimmer Score: 

          
Start: 4237559Stop: 4236669

          
Length: 891


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4287 translation of PA4287Homolog Bit Score 566.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5815 (ORF: BLASTX 347.0), t_PA4287 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATACCTGTTTCCCCTGCTGGCCGTGTTCATCTGGGCCGGCAACACCGTCGTCAACAAGCTCGCCGTG 
GGGATCATCCAGCCCGCCGAGATCGGTTTCTTCCGCTGGCTGCTGGTCGGCCTGGCGCTGACGCCCTTCATG 
CTCGGCCCGGTGCTGCGCAACCGCCGCTACATCCTCGCCAACCTCGGCAAGTTCGTGGTCCTCGGCCTGCTC 
GGCATGGCCGTCTACCAGAGCCTGGCCTACTACGCGGCGGCGCTGACCAGCGCCACCAACATGGGCATCATC 
CTGTCGCTGATGCCCCTGATGTCGCTGGGCCTGGCCAGCAGCATCCTGGCCCACCGGCTGAACGCCGGGGCG 
CTGCTCGGCGCGCTGGTGTCGCTGGCCGGCGTGGTGCTGGTGATTTCCCAGGGCCATCTCGGCGCTTTGCTG 
GAGCATGGAGTGAACCTCGGCGACGCGATGATGATCGTCGCCACCCTGGCCTATGCGGTGTACAGCGTGCTG 
CTGAAGAAATGGAGCCTGAAGCTGCCGGCCATGCAACTGCTCTACCTGCAGGTGCTGGTGGCGATCCTCGCC 
CTGCTGCCGCTGTACCTGCTGTCGCCGCGCACCGGCCTGAACGCCGCCAACCTGCCGCTGGTGCTGTACGCC 
GCGCTGTTCGCCTCGATCGTCGCCGCGCTGGCCTGGATGCACGGTGTCGCCCGTCTCGGGCCGAGCCGGATG 
GCGCTGTTCTTCAACCTGCTGCCGATCATCACCGCCTGCATCGCCACCCTGGTGCTCGGCGAGCGCCTGACC 
GTCCATCACCTGGTCGGCGGCGCGCTGACCCTGGCCGGGGTCCTGCTGGCCGAGTTCTGGCAGCGCCGCCCG 
GCCCGCCTGCGCTCGGCAACCTGCTGA