ViewGene

Locus Name:
GeneID:
Location:

GeneID:2733
TrivialName: PA14_36760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36760
PAO1 Ortholog Locus:PA2150
Sequence Length:882
Protein Length:293
Start: 3278313
Stop: 3277432
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05538.1|AE004642_5 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 289/293 (98%), Positives = 291/293 (99%)
Sequence:
ATGGCGCGTGCGATCTGGAAAGGCGCGATCAGCTTCGGCCTGGTGCATATACCGGTGAGCCTGTCGGCGGCG
ACCTCGTCGCAGGGCATCGATTTCGACTGGCTCGACCAGCGCAGCATGGAGCCGGTCGGCTACAAACGGGTG
AACAAGGTCACCGGCAAGGAGATCGAGCGCGAGAACATCGTGAAGGGCGTGGAGTACGAAAAGGGTCGCTAC
GTGGTGCTGAGCGAGGAAGAAATCCGCGCGGCGCATCCCAAGTCGACCCAGACCATCGAGATCTTCGCTTTC
GTCGATAGCCAGGAAATTCCCCTGCAGCACTTCGATACCCCGTACTACCTGGCCCCCGACCGGCGCGGAGGC
AAGGTCTACGCGCTGCTCCGGGAGACCCTGGAGCGCACCGGCAAGGTCGCCCTGGCCAACGTCGTCCTGCAC
ACCCGCCAGCACCTGGCGCTCCTGCGGCCTCTAGAGGACGCCCTGGTGCTGATCACTCTGCGCTGGCCGTCG
CAGGTGCGCAGCCTGGATGGCCTGGAGCTGGAGGAAAGCGTCACCGAGGCGAAACTCGACAAGCGCGAGCTG
GAGATGGCCAAGCGCCTGGTGGAGGACATGGCCTCCCACTGGGCGCCGGACGAATACAAGGACAGCTTCAGC
GACAAGATCATGAAGCTGGTCGAGGAAAAGGCCGCCAAGGGCCAACTGCACGCGGTGGAGGAAGAGGAGGAG
GTGGCCGGCAAGGGCGCCGACATCATCGATCTCACCGACCTGCTCAAGCGCAGCCTGCGTTCCCGCGCCGGC
GGCGGCAAGGACAAGGGTAGCGAAAAGGCCGGGGCCGACGCGAAGGGTCGCGCCAAGTCCGGTGCCTCGCGT
TCGCGGCGCAAGGCCTGA
Translation:
MARAIWKGAISFGLVHIPVSLSAATSSQGIDFDWLDQRSMEPVGYKRVNKVTGKEIERENIVKGVEYEKGRY
VVLSEEEIRAAHPKSTQTIEIFAFVDSQEIPLQHFDTPYYLAPDRRGGKVYALLRETLERTGKVALANVVLH
TRQHLALLRPLEDALVLITLRWPSQVRSLDGLELEESVTEAKLDKRELEMAKRLVEDMASHWAPDEYKDSFS
DKIMKLVEEKAAKGQLHAVEEEEEVAGKGADIIDLTDLLKRSLRSRAGGGKDKGSEKAGADAKGRAKSGASR
SRRKA*
AnnotationID:2741GeneID:2733
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:12
Gene Name:
Confidence Code:3
GeneProduct:putative KU domain protein
Cell Localization:()
Synonyms:PA2150
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00789,cd00594,pfam02735
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56940.1| (AE016868) KU domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 299

 Score =  373 bits (957), Expect = e-103
 Identities = 188/287 (65%), Positives = 232/287 (80%), Gaps = 8/287 (2%)

>emb|CAE33336.1| (BX640445) putative membrane protein [Bordetella bronchiseptica]
          Length = 308

 Score =  271 bits (692), Expect = 4e-72
 Identities = 131/295 (44%), Positives = 195/295 (66%), Gaps = 3/295 (1%)
Structural Features:
cd00789, KU_like
CD-Length = 256 residues, 100.0% aligned
Score =  318 bits (816), Expect = 6e-88
Identities = 127/262 (48%), Positives = 168/262 (64%), Gaps = 6/262 (2%)

cd00594, KU
CD-Length = 270 residues, 100.0% aligned
Score =  188 bits (479), Expect = 7e-49
Identities = 97/272 (35%), Positives = 140/272 (51%), Gaps = 20/272 (7%)

pfam02735, Ku, Ku70/Ku80 beta-barrel domain. 
CD-Length = 205 residues, 100.0% aligned
Score =  147 bits (372), Expect = 2e-36
Identities = 79/208 (37%), Positives = 109/208 (52%), Gaps = 19/208 (9%)
Genomic Context:
Comment:
ReferenceID:5469
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22613
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32578
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2733_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2733

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4466 PA2150_tr translation of PA2150 293 98.63 99.31 0 1459.0
129311 gb|AAG05538.1|AE004642_5 (AE004642) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 293 98.63 99.31 0 1459.0
129312 gb|AAN68862.1|AE016518_8 (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440] 296 67.22 80.74 26 1020.0
129313 gb|AAO56940.1| (AE016868) KU domain protein [Pseudomonas syringae pv. tomato str. DC3000] 307 62.86 77.52 22 968.0
129314 emb|CAE33336.1| (BX640445) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 316 41.77 62.34 31 697.0
GC ORFID: 45735How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2150Glimmer Score:
Start: 1675601Stop: 1676482
Length: 882
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2150 translation of PA2150Homolog Bit Score 566.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene190 (ORF: BLASTX 385.0), t_PA2150 (ORF: GLIMMER)
GC ORF Sequence
ATGGCGCGTGCGATCTGGAAAGGCGCGATCAGCTTCGGCCTGGTGCATATACCGGTGAGCCTGTCGGCGGCG
ACCTCGTCGCAGGGCATCGATTTCGACTGGCTCGACCAGCGCAGCATGGAGCCGGTCGGCTACAAACGGGTG
AACAAGGTCACCGGCAAGGAGATCGAGCGCGAGAACATCGTGAAGGGCGTGGAGTACGAAAAGGGTCGCTAC
GTGGTGCTGAGCGAGGAAGAAATCCGCGCGGCGCATCCCAAGTCGACCCAGACCATCGAGATCTTCGCTTTC
GTCGATAGCCAGGAAATTCCCCTGCAGCACTTCGATACCCCGTACTACCTGGCCCCCGACCGGCGCGGAGGC
AAGGTCTACGCGCTGCTCCGGGAGACCCTGGAGCGCACCGGCAAGGTCGCCCTGGCCAACGTCGTCCTGCAC
ACCCGCCAGCACCTGGCGCTCCTGCGGCCTCTAGAGGACGCCCTGGTGCTGATCACTCTGCGCTGGCCGTCG
CAGGTGCGCAGCCTGGATGGCCTGGAGCTGGAGGAAAGCGTCACCGAGGCGAAACTCGACAAGCGCGAGCTG
GAGATGGCCAAGCGCCTGGTGGAGGACATGGCCTCCCACTGGGCGCCGGACGAATACAAGGACAGCTTCAGC
GACAAGATCATGAAGCTGGTCGAGGAAAAGGCCGCCAAGGGCCAACTGCACGCGGTGGAGGAAGAGGAGGAG
GTGGCCGGCAAGGGCGCCGACATCATCGATCTCACCGACCTGCTCAAGCGCAGCCTGCGTTCCCGCGCCGGC
GGCGGCAAGGACAAGGGTAGCGAAAAGGCCGGGGCCGACGCGAAGGGTCGCGCCAAGTCCGGTGCCTCGCGT
TCGCGGCGCAAGGCCTGA