ViewGene
Locus Name:
GeneID:
Location:

GeneID:2732
TrivialName: PA14_41440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41440
PAO1 Ortholog Locus:PA1789
Sequence Length:864
Protein Length:287
Start: 3695262
Stop: 3696125
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05178.1|AE004604_8 (AE004604) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 286/287 (99%), Positives = 287/287 (100%)
Sequence:
ATGCAAGCCATTCGCAGCATCCTCGTGGTGATTGAACCGGACCAGCTGGAAGGTCTCGCCCTGAAACGGGCA
CAACTGATCGCCGGCGTGACCCAGTCGCACCTGCACCTGCTGGTCTGCGAGAAGCGCCGCGACCACAGCGCC
GCCCTCAACGACCTGGCCCAGGAACTGCGTGAGGAAGGCTACAGCGTCTCGACCAACCAGGCCTGGAAGGAC
TCCCTGCACCAGACCATCATCGCCGAGCAACAGGCCGAAGGCTGCGGCCTGATCATCAAGCAGCACTTTCCC
GACAACCCGCTGAAAAAGGCCATCCTCACCCCGGACGACTGGAAACTGCTGCGCTTCGCGCCCTGCCCGGTA
CTGATGACCAAGACCGCCCGGCCCTGGACGGGCGGAAAGATCATCGCCGCGGTCGACGTCGGCAACAACGAC
GGCGAGCACCGCTCCCTGCACGCCGGGATCATCAGCCATGCCTACGACATCGCCGGCCTGGCCAAGGCCACG
CTGCACGTGATCAGCGCCCACCCCTCGCCGATGCTCTCCTCCGCCGACCCGACCTTCCAGCTCAGCGAAACC
ATCGAGGCCCGCTATCGCGAGGCCTGCCGCACCTTCCAGGCCGAGTACGGTTTCAGCGACGAACAATTGCAC
ATCGAGGAAGGTCCGGCCGACGTGCTGATCCCGCGCACCGCGCAGAAGCTCGACGCGGTGGTCACCGTGATC
GGCACCGTGGCGCGCACCGGGTTGTCCGGCGCGCTGATCGGCAATACCGCGGAAGTGGTGCTGGATACCCTG
GAAAGCGACGTGCTGGTGTTGAAGCCGGACGACATCATCGCCCACCTGGAGGAGCTGGCCAGCAAGGAGTGA
Translation:
MQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRDHSAALNDLAQELREEGYSVSTNQAWKD
SLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTARPWTGGKIIAAVDVGNND
GEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLH
IEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPDDIIAHLEELASKE*
AnnotationID:2740GeneID:2732
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 08:08:12
Gene Name:
Confidence Code:3
GeneProduct:putative universal stress protein
Cell Localization:(1) Cytoplasmic
Synonyms:uspA
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67800.1|AE016411_5 (AE016782) universal stress protein family [Pseudomonas putida
           KT2440]
          Length = 287

 Score =  392 bits (1007), Expect = e-108
 Identities = 193/285 (67%), Positives = 230/285 (80%), Gaps = 1/285 (0%)

>gb|AAN55389.1|AE015676_11 (AE015676) universal stress protein family [Shewanella oneidensis
           MR-1]
          Length = 310

 Score =  158 bits (400), Expect = 3e-38
 Identities = 102/309 (33%), Positives = 157/309 (50%), Gaps = 27/309 (8%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22611




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37106




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2732_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2732
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4465
                           PA1789_tr
                           translation of PA1789
                           287
                           99.65
                           99.99
                           0
                           1459.0
     

     
     
129309
                           gb|AAG05178.1|AE004604_8
                           (AE004604) hypothetical protein PA1789 [Pseudomonas aeruginosa PAO1]
                           287
                           99.65
                           99.99
                           0
                           1459.0
     

     
     
129310
                           gb|AAN67800.1|AE016411_5
                           (AE016782) universal stress protein family [Pseudomonas putida KT2440]
                           288
                           67.01
                           79.86
                           2
                           1006.0
     

     






      

          
GC ORFID: 45734How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1789Glimmer Score: 

          
Start: 1258647Stop: 1257784

          
Length: 864


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1789 translation of PA1789Homolog Bit Score 566.0

          
Other Homologs:  t_PA1789 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCCATTCGCAGCATCCTCGTGGTGATTGAACCGGACCAGCTGGAAGGTCTCGCCCTGAAACGGGCA 
CAACTGATCGCCGGCGTGACCCAGTCGCACCTGCACCTGCTGGTCTGCGAGAAGCGCCGCGACCACAGCGCC 
GCCCTCAACGACCTGGCCCAGGAACTGCGTGAGGAAGGCTACAGCGTCTCGACCAACCAGGCCTGGAAGGAC 
TCCCTGCACCAGACCATCATCGCCGAGCAACAGGCCGAAGGCTGCGGCCTGATCATCAAGCAGCACTTTCCC 
GACAACCCGCTGAAAAAGGCCATCCTCACCCCGGACGACTGGAAACTGCTGCGCTTCGCGCCCTGCCCGGTA 
CTGATGACCAAGACCGCCCGGCCCTGGACGGGCGGAAAGATCATCGCCGCGGTCGACGTCGGCAACAACGAC 
GGCGAGCACCGCTCCCTGCACGCCGGGATCATCAGCCATGCCTACGACATCGCCGGCCTGGCCAAGGCCACG 
CTGCACGTGATCAGCGCCCACCCCTCGCCGATGCTCTCCTCCGCCGACCCGACCTTCCAGCTCAGCGAAACC 
ATCGAGGCCCGCTATCGCGAGGCCTGCCGCACCTTCCAGGCCGAGTACGGTTTCAGCGACGAACAATTGCAC 
ATCGAGGAAGGTCCGGCCGACGTGCTGATCCCGCGCACCGCGCAGAAGCTCGACGCGGTGGTCACCGTGATC 
GGCACCGTGGCGCGCACCGGGTTGTCCGGCGCGCTGATCGGCAATACCGCGGAAGTGGTGCTGGATACCCTG 
GAAAGCGACGTGCTGGTGTTGAAGCCGGACGACATCATCGCCCACCTGGAGGAGCTGGCCAGCAAGGAGTGA