ViewGene

Locus Name:
GeneID:
Location:

GeneID:2731
TrivialName: PA14_46170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46170
PAO1 Ortholog Locus:PA1413
Sequence Length:873
Protein Length:290
Start: 4106472
Stop: 4105600
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04802.1|AE004571_1 (AE004571) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 289/290 (99%), Positives = 290/290 (100%)
Sequence:
GTGGAGTTCGGCCAGTTGAGGATCTTCCAGGCGGTCGCCGAGGAAGGCTCCATCGCCCGCGCCGCCGAGCGC
CTGCACCGGGTGCCGTCGAACCTGTCGACGCGCCTGCGGCAACTGGAGGAACAGCTTGGCGTCGACCTGTTC
CTCCGCGAACGCCAGCGCCTGCAACTGTCGCCGGCCGGCAAGGTCCTGCTGGACTACGCCGCGCGGCTGTTC
GCCCTGCAGGAGGAGGCGCGCGCGGCGGTGCAGGGAGGCGAACCGGTGGGCGACTTCGCCCTCGGCTCGATG
TACAGCACCGCGGCGATCCACCTGCCGCCGCGCCTGGCGGAATACCACCGGCGCTATCCGGCGGTGAACCTG
CAATTGCAGACCGCGCCCAGCGGCGAGCTGGTCGAGTCGCTGCTGGGCGGGCGCCTGGACGCCGTGCTGGTG
GACGGCCCGCTGGACTTCGACGGTCTGGAGGGCCTGCCGATGTTCGAGGAGCGCATGGTGCTGGTCACCGAG
AATGGCCACCCGCCGGTGCGCGGTCCCGAGGACGTGGCCGGCAGCGCGGTGATCGCCTTCCGCCCGCGCTGC
TCCTATCGCCTGCTGCTGGAGTCCTGGTTCGCCAGCGCGCGGGTGAGCATGGGCCGGGTGATGGAGATCGAG
TCCTACCACAGCATGCTGGCCTGCGTGGTGGCCGGCGGCGGGGTGGCGCTGATGCCGGTGTCGATGCTGCAA
AGCCTGCCGGGGCGGGAGTCGGTGGCGGTGCATGCGCTGGCCGAACCGTTCGCCCGGGCGAGTACCTGGCTG
GTCTGGCGCAAGGGCATGGTCGGCGCCAACCTGAAGGCCTGGATCGGTCTTCTGCAAGGGCGGGAATCGGCG
TTGGCTTGA
Translation:
MEFGQLRIFQAVAEEGSIARAAERLHRVPSNLSTRLRQLEEQLGVDLFLRERQRLQLSPAGKVLLDYAARLF
ALQEEARAAVQGGEPVGDFALGSMYSTAAIHLPPRLAEYHRRYPAVNLQLQTAPSGELVESLLGGRLDAVLV
DGPLDFDGLEGLPMFEERMVLVTENGHPPVRGPEDVAGSAVIAFRPRCSYRLLLESWFASARVSMGRVMEIE
SYHSMLACVVAGGGVALMPVSMLQSLPGRESVAVHALAEPFARASTWLVWRKGMVGANLKAWIGLLQGRESA
LA*
AnnotationID:2739GeneID:2731
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:18
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, LysR family
Cell Localization:()
Synonyms:yneJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583,pfam03466
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70099.1|AE016649_7 (AE016791) transcriptional regulator, LysR family [Pseudomonas
           putida KT2440]
          Length = 297

 Score =  390 bits (1001), Expect = e-108
 Identities = 196/283 (69%), Positives = 227/283 (80%)

>gb|AAN80406.1|AE016760_265 (AE016760) Hypothetical transcriptional regulator yneJ [Escherichia
           coli CFT073]
          Length = 293

 Score =  300 bits (767), Expect = 9e-81
 Identities = 148/288 (51%), Positives = 200/288 (69%)

>gb|AAO56163.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 292

 Score =  296 bits (759), Expect = 7e-80
 Identities = 147/285 (51%), Positives = 198/285 (69%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues,  91.9% aligned
Score =  145 bits (367), Expect = 5e-36
Identities = 108/275 (39%), Positives = 146/275 (53%), Gaps = 8/275 (2%)

pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues,  99.0% aligned
Score =  122 bits (308), Expect = 4e-29
Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Genomic Context:
Comment:
ReferenceID:14659
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:22609
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37425
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2731_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2731

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4462 PA1413_tr translation of PA1413 290 99.65 99.99 0 1460.0
129288 gb|AAG04802.1|AE004571_1 (AE004571) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 290 99.31 99.99 0 1457.0
129289 gb|AAN70099.1|AE016649_7 (AE016791) transcriptional regulator, LysR family [Pseudomonas putida KT2440] 297 66.32 77.44 7 992.0
129296 emb|CAC90326.1| (AJ414148) putative LysR-family transcriptional regulatory protein [Yersinia pestis CO92] 295 50.50 64.74 11 744.0
129294 gb|AAM86219.1|AE013869_4 (AE013869) putative transcriptional regulator LYSR-type [Yersinia pestis KIM] 295 50.50 64.74 11 744.0
GC ORFID: 45733How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1413Glimmer Score:
Start: 847437Stop: 848309
Length: 873
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1413 translation of PA1413Homolog Bit Score 566.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7489 (ORF: BLASTX 296.0), t_PA4203 (ORF: BLASTX 206.0), t_PA0708 (ORF: BLASTX 182.0), t_PA1413 (ORF: GLIMMER)
GC ORF Sequence
GTGGAGTTCGGCCAGTTGAGGATCTTCCAGGCGGTCGCCGAGGAAGGCTCCATCGCCCGCGCCGCCGAGCGC
CTGCACCGGGTGCCGTCGAACCTGTCGACGCGCCTGCGGCAACTGGAGGAACAGCTTGGCGTCGACCTGTTC
CTCCGCGAACGCCAGCGCCTGCAACTGTCGCCGGCCGGCAAGGTCCTGCTGGACTACGCCGCGCGGCTGTTC
GCCCTGCAGGAGGAGGCGCGCGCGGCGGTGCAGGGAGGCGAACCGGTGGGCGACTTCGCCCTCGGCTCGATG
TACAGCACCGCGGCGATCCACCTGCCGCCGCGCCTGGCGGAATACCACCGGCGCTATCCGGCGGTGAACCTG
CAATTGCAGACCGCGCCCAGCGGCGAGCTGGTCGAGTCGCTGCTGGGCGGGCGCCTGGACGCCGTGCTGGTG
GACGGCCCGCTGGACTTCGACGGTCTGGAGGGCCTGCCGATGTTCGAGGAGCGCATGGTGCTGGTCACCGAG
AATGGCCACCCGCCGGTGCGCGGTCCCGAGGACGTGGCCGGCAGCGCGGTGATCGCCTTCCGCCCGCGCTGC
TCCTATCGCCTGCTGCTGGAGTCCTGGTTCGCCAGCGCGCGGGTGAGCATGGGCCGGGTGATGGAGATCGAG
TCCTACCACAGCATGCTGGCCTGCGTGGTGGCCGGCGGCGGGGTGGCGCTGATGCCGGTGTCGATGCTGCAA
AGCCTGCCGGGGCGGGAGTCGGTGGCGGTGCATGCGCTGGCCGAACCGTTCGCCCGGGCGAGTACCTGGCTG
GTCTGGCGCAAGGGCATGGTCGGCGCCAACCTGAAGGCCTGGATCGGTCTTCTGCAAGGGCGGGAATCGGCG
TTGGCTTGA