|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG04802.1|AE004571_1 (AE004571) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 289/290 (99%), Positives = 290/290 (100%)
|
Sequence:
GTGGAGTTCGGCCAGTTGAGGATCTTCCAGGCGGTCGCCGAGGAAGGCTCCATCGCCCGCGCCGCCGAGCGC
CTGCACCGGGTGCCGTCGAACCTGTCGACGCGCCTGCGGCAACTGGAGGAACAGCTTGGCGTCGACCTGTTC
CTCCGCGAACGCCAGCGCCTGCAACTGTCGCCGGCCGGCAAGGTCCTGCTGGACTACGCCGCGCGGCTGTTC
GCCCTGCAGGAGGAGGCGCGCGCGGCGGTGCAGGGAGGCGAACCGGTGGGCGACTTCGCCCTCGGCTCGATG
TACAGCACCGCGGCGATCCACCTGCCGCCGCGCCTGGCGGAATACCACCGGCGCTATCCGGCGGTGAACCTG
CAATTGCAGACCGCGCCCAGCGGCGAGCTGGTCGAGTCGCTGCTGGGCGGGCGCCTGGACGCCGTGCTGGTG
GACGGCCCGCTGGACTTCGACGGTCTGGAGGGCCTGCCGATGTTCGAGGAGCGCATGGTGCTGGTCACCGAG
AATGGCCACCCGCCGGTGCGCGGTCCCGAGGACGTGGCCGGCAGCGCGGTGATCGCCTTCCGCCCGCGCTGC
TCCTATCGCCTGCTGCTGGAGTCCTGGTTCGCCAGCGCGCGGGTGAGCATGGGCCGGGTGATGGAGATCGAG
TCCTACCACAGCATGCTGGCCTGCGTGGTGGCCGGCGGCGGGGTGGCGCTGATGCCGGTGTCGATGCTGCAA
AGCCTGCCGGGGCGGGAGTCGGTGGCGGTGCATGCGCTGGCCGAACCGTTCGCCCGGGCGAGTACCTGGCTG
GTCTGGCGCAAGGGCATGGTCGGCGCCAACCTGAAGGCCTGGATCGGTCTTCTGCAAGGGCGGGAATCGGCG
TTGGCTTGA |
Translation:
MEFGQLRIFQAVAEEGSIARAAERLHRVPSNLSTRLRQLEEQLGVDLFLRERQRLQLSPAGKVLLDYAARLF
ALQEEARAAVQGGEPVGDFALGSMYSTAAIHLPPRLAEYHRRYPAVNLQLQTAPSGELVESLLGGRLDAVLV
DGPLDFDGLEGLPMFEERMVLVTENGHPPVRGPEDVAGSAVIAFRPRCSYRLLLESWFASARVSMGRVMEIE
SYHSMLACVVAGGGVALMPVSMLQSLPGRESVAVHALAEPFARASTWLVWRKGMVGANLKAWIGLLQGRESA
LA* |
AnnotationID:2739 | GeneID:2731 |
|
Modification Date/Time: |
2005-02-24 06:06:18 |
|
|
|
GeneProduct: | putative transcriptional regulator, LysR family |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (25) Transcriptional regulators |
|
Alternate Gene Product Name: | |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >gb|AAN70099.1|AE016649_7 (AE016791) transcriptional regulator, LysR family [Pseudomonas
putida KT2440]
Length = 297
Score = 390 bits (1001), Expect = e-108
Identities = 196/283 (69%), Positives = 227/283 (80%)
>gb|AAN80406.1|AE016760_265 (AE016760) Hypothetical transcriptional regulator yneJ [Escherichia
coli CFT073]
Length = 293
Score = 300 bits (767), Expect = 9e-81
Identities = 148/288 (51%), Positives = 200/288 (69%)
>gb|AAO56163.1| (AE016865) transcriptional regulator, LysR family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 292
Score = 296 bits (759), Expect = 7e-80
Identities = 147/285 (51%), Positives = 198/285 (69%) |
|
Structural Features: | COG0583, LysR, Transcriptional regulator [Transcription]
CD-Length = 297 residues, 91.9% aligned
Score = 145 bits (367), Expect = 5e-36
Identities = 108/275 (39%), Positives = 146/275 (53%), Gaps = 8/275 (2%)
pfam03466, LysR_substrate, LysR substrate binding domain.
CD-Length = 209 residues, 99.0% aligned
Score = 122 bits (308), Expect = 4e-29
Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
|
|
|
|
|
|