ViewGene
Locus Name:
GeneID:
Location:

GeneID:2730
TrivialName: PA14_55880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55880
PAO1 Ortholog Locus:PA4301
Sequence Length:885
Protein Length:294
Start: 4989371
Stop: 4988487
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07689.1|AE004846_6 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 291/294 (98%), Positives = 292/294 (99%)
Sequence:
GTGAACGGCGCGCAACTGCTGGTGCTGTTCAGCGGCGTGCTGGCTTTCGCCGCGCTGGCCCTGGCGTTCATG
GGCTGGCGCGCCGGGCGCAACGAACTGGTGGTTGAACGGCTGCTGGGACGCCAGGAGGCGGTCGCGGTGCGG
CCGCGCAGCAGTCACTGGCTGGCTCGCCAGATGCGTCGCGCCGGTATCCAGCGCCCGCGCCCGTGGTTGTTC
GGGGCGGCAGTGCTCGCGCTGCTGCTGGTCTGGAGCGGATTGCGCCTGTTCGGCATCGTCGGTGCGCTAGGC
GGCCTGCTACTGGCGGCGCTGTCCTGCCGCGTCGCCCTGGGCATGCTCTACCAGCGCCGCCTGAAGCGAATG
ATCCGGCAGATGCCGCGCTTCCTCGACCAGGTGGTGCGCAGCCTGCACGCCGGGCGCACGCTGGGCGACGCG
CTGATGCAGGCGGTGGAGAACGCCGAGGAGCCGCTGCGCGACATCTTCACCCTGGCACGCAACCACGTGCTT
CTCGGCATCCACCTGCCGGAGGCGTTGCAGGAAGTCGCCGAACTCTACGAGGTGGAGGAACTGCGCATCCTC
GCCCTGGGCGTTTCGGTCAACCACCGTTATGGCGGCAATACCAGCGACCTGCTGGACAGCATCGTCAAGCTC
ATCCACGAGCGCGAGAAGCTCAGCCGGCAGTTGCACGCGATGACCGGCGAGACACGGATCAGCGCCTATGTC
CTGGCCGGCGTGCCGAGCGCCCTGGGCGGCTACATCCTGGCGAGCAACCCGGGCTATCTGCTGAACATGTGG
GCCGACGGCACCGGGCGTTTCCTGCTGCTGGCCTCGCTCGGGCTGCAACTGCTCGGCTGCTATGCGCTGTGG
CGCATGCTCAAGAGCGTCTAG
Translation:
MNGAQLLVLFSGVLAFAALALAFMGWRAGRNELVVERLLGRQEAVAVRPRSSHWLARQMRRAGIQRPRPWLF
GAAVLALLLVWSGLRLFGIVGALGGLLLAALSCRVALGMLYQRRLKRMIRQMPRFLDQVVRSLHAGRTLGDA
LMQAVENAEEPLRDIFTLARNHVLLGIHLPEALQEVAELYEVEELRILALGVSVNHRYGGNTSDLLDSIVKL
IHEREKLSRQLHAMTGETRISAYVLAGVPSALGGYILASNPGYLLNMWADGTGRFLLLASLGLQLLGCYALW
RMLKSV*
AnnotationID:2738GeneID:2730
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4301
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4965
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4965, TadB, Flp pilus assembly protein TadB 
[Intracellular trafficking and secretion]
CD-Length = 309 residues,  99.7% aligned
Score =  236 bits (603), Expect = 2e-63
Identities = 114/308 (37%), Positives = 162/308 (52%), Gaps = 17/308 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14657




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22607




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36663




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2730_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2730
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4461
                           PA4301_tr
                           translation of PA4301
                           294
                           98.97
                           99.31
                           0
                           1462.0
     

     
     
129286
                           gb|AAG07689.1|AE004846_6
                           (AE004846) hypothetical protein PA4301 [Pseudomonas aeruginosa PAO1]
                           294
                           98.63
                           99.31
                           0
                           1459.0
     

     
     
129287
                           gb|AAO58283.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           295
                           43.05
                           64.06
                           1
                           608.0
     

     






      

          
GC ORFID: 45732How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4301Glimmer Score: 

          
Start: 4253047Stop: 4252163

          
Length: 885


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4301 translation of PA4301Homolog Bit Score 567.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5763 (ORF: BLASTX 239.0), t_PA4301 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACGGCGCGCAACTGCTGGTGCTGTTCAGCGGCGTGCTGGCTTTCGCCGCGCTGGCCCTGGCGTTCATG 
GGCTGGCGCGCCGGGCGCAACGAACTGGTGGTTGAACGGCTGCTGGGACGCCAGGAGGCGGTCGCGGTGCGG 
CCGCGCAGCAGTCACTGGCTGGCTCGCCAGATGCGTCGCGCCGGTATCCAGCGCCCGCGCCCGTGGTTGTTC 
GGGGCGGCAGTGCTCGCGCTGCTGCTGGTCTGGAGCGGATTGCGCCTGTTCGGCATCGTCGGTGCGCTAGGC 
GGCCTGCTACTGGCGGCGCTGTCCTGCCGCGTCGCCCTGGGCATGCTCTACCAGCGCCGCCTGAAGCGAATG 
ATCCGGCAGATGCCGCGCTTCCTCGACCAGGTGGTGCGCAGCCTGCACGCCGGGCGCACGCTGGGCGACGCG 
CTGATGCAGGCGGTGGAGAACGCCGAGGAGCCGCTGCGCGACATCTTCACCCTGGCACGCAACCACGTGCTT 
CTCGGCATCCACCTGCCGGAGGCGTTGCAGGAAGTCGCCGAACTCTACGAGGTGGAGGAACTGCGCATCCTC 
GCCCTGGGCGTTTCGGTCAACCACCGTTATGGCGGCAATACCAGCGACCTGCTGGACAGCATCGTCAAGCTC 
ATCCACGAGCGCGAGAAGCTCAGCCGGCAGTTGCACGCGATGACCGGCGAGACACGGATCAGCGCCTATGTC 
CTGGCCGGCGTGCCGAGCGCCCTGGGCGGCTACATCCTGGCGAGCAACCCGGGCTATCTGCTGAACATGTGG 
GCCGACGGCACCGGGCGTTTCCTGCTGCTGGCCTCGCTCGGGCTGCAACTGCTCGGCTGCTATGCGCTGTGG 
CGCATGCTCAAGAGCGTCTAG