ViewGene
Locus Name:
GeneID:
Location:

GeneID:273
TrivialName: PA14_36810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36810
PAO1 Ortholog Locus:PA2147
Sequence Length:2130
Protein Length:709
Start: 3281440
Stop: 3279311
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05535.1|AE004642_2 (AE004642) catalase HPII [Pseudomonas aeruginosa PAO1]
Identities = 704/709 (99%), Positives = 708/709 (99%)
Sequence:
ATGAGCGAGCAGAACAACGAGCAGCGCAGCCAGGCGGCCGGCACCGACACCGTCGACCGTGGCAACAGCAAC
GCCAAGCTGGAACAGCTGGAGGCCTATCGCGAGGACGCCACCGGAGAGGCCCTGAGCACCAATACCGGCACC
CGCATCGCCGATAACCAGAACACCCTGAAGGCCGGCGAGCGCGGACCGTCGTTGCTCGAAGACTTCATCATG
CGCGAGAAGATCACCCACTTCGACCACGAGCGCATTCCCGAGCGCGTGGTCCACGCTCGTGGCTCGGCGGCG
CATGGCTACTTCGAGGCCTACGAGGACCTCAGCGACCTGACCAAGGCCGGCTTCCTCGCCGAGGCGGGCAAG
CGTACCCCGGTCTTCGTGCGTTTCTCCACCGTGCAGGGGCCGCGCGGGTCCGCGGATACGGTGCGTGACGTA
CGCGGCTTCGCCGTGAAGTTCTATACCGACGAAGGCAACTTCGACCTGGTCGGCAACAACATGCCGGTGTTC
TTCATCCAGGATGCGATCAAGTTCCCCGACTTCGTCCATGCGGTGAAACCCGAACCGCACAACGAGATTCCC
ACCGGCGCGTCTGCCCACGACACCTTCTGGGACTTCGTTTCGCTGACCCCGGAGTCGGCGCACATGGTCATG
TGGCTGATGTCCGATCGCGCCATTCCGATCGCCTACCGCAACATGCAGGGCTTCGGCGTGCACACCTTCCGC
CTGGTCAACGCGGCCGGCGAGAGCGTGCTGGTCAAGTTCCACTGGCGACCGAAGTCCGGGACCTGCTCGCTG
GTCTGGGACGAGGCGCAGAAGCTCGCCGGCAAGGACCCCGACTTCAACCGGCGGACCCTCTGGGAGGACATC
GAGAAGGGCGACTATCCCGAATGGGAGTTGGGCCTGCAGGTGATCCCGGAGAACCAGCAGGACAGCTTCGAC
TTCGACCTGCTCGACCCCACCAAGCTGGTGCCCGAGGAGTTGGTGCCGGTAAGGGTGGTGGGGCGGATGGTA
CTCAACCGCAACCCCGACAATTTCTTCGCCGAGACTGAGCAGGTGGCGTTCCACGTCGGCCACCTGGTCCCC
GGAATCGACTTCACCAACGACCCGCTGTTGCAGGGTCGGCTGTTCTCCTATACCGACACCCAACTGCTGCGC
CTGAGCGGGCCGAACTTCAACGAAATCCCGATCAACCGCCCGCTGTGCCCGTTCCACAACAACCAGCGCGAC
GCGCCGCACCGGCAGACCATCAACCGCGGCCGGGCTTCCTATGAACCGAACTCGATCGACGGCGGCTGGCCG
AAGGAAACCCCGCCGGCGGCGCGCAACGGCGGCTTCTCCAGCTACCACGAGCCGGTCAGCGGCAGCAAGCTG
CGCAAGCGCGCCGACTCCTTCGCCGATCATTTCAGCCAGGCCGCATTGTTCTGGCACAGCATGAGCGAGGCC
GAGCAGGCGCATATCGTCGCCGCCTACAGCTTCGAACTGTCCAAGGTCGAGCGGCAATCGATCCGTGAGCGC
GAAGTCAACCAGATACTCCTCAACATTGATCCGCAACTGGCCGCCAGGGTCGCGGCGAACGTCGGTGTGCAG
CTCGCCGCGCCGGCCAACCCGGCACCGCAGCCGAAGCCGTCGCCGGCGCTGAGCCAGATGAACCTGCTGTCC
GGCGACATCCGTTCGCGCAAGGTGGCGATCCTGATCGCCGACGGCGTCGCCGAGAGCGACGTCAGCGACCTG
CGCGACGCGCTCCGCCAGGAGGGCGCGGACGCCAAGCTGATCGCCCCCAGCGCTTCGCCGGTGCAGGCTGAA
AACGGCGCCGAACTGAACCCGGAGGGAACCTGGGACGGCCTGCCGTCGGTAGCCTTCGACGCGGTCTTCGTG
CCTGGCGGCGCGGCCAGCAGCCAGGCCATCGGCGCTGACGGACGCGGCCTGCACTACCTGCTGGAAGCCTAC
AAGCACCTGAAGCCAGTGGCCTTCGCCGGCGATGCCCAGGCGCTGGCCAGCCAGCTTTCGTTGCCTGGCGAC
CCCGGCGTGCTGCTCGGCGCCACGGCCACCGATGTCTTCCCCGGCCTGCGCCAGGCATTGATGCAGCACCGG
ATCTGGCAGCGCGAGGCGGCGACCAAGGCGATCCCCGCCTGA
Translation:
MSEQNNEQRSQAAGTDTVDRGNSNAKLEQLEAYREDATGEALSTNTGTRIADNQNTLKAGERGPSLLEDFIM
REKITHFDHERIPERVVHARGSAAHGYFEAYEDLSDLTKAGFLAEAGKRTPVFVRFSTVQGPRGSADTVRDV
RGFAVKFYTDEGNFDLVGNNMPVFFIQDAIKFPDFVHAVKPEPHNEIPTGASAHDTFWDFVSLTPESAHMVM
WLMSDRAIPIAYRNMQGFGVHTFRLVNAAGESVLVKFHWRPKSGTCSLVWDEAQKLAGKDPDFNRRTLWEDI
EKGDYPEWELGLQVIPENQQDSFDFDLLDPTKLVPEELVPVRVVGRMVLNRNPDNFFAETEQVAFHVGHLVP
GIDFTNDPLLQGRLFSYTDTQLLRLSGPNFNEIPINRPLCPFHNNQRDAPHRQTINRGRASYEPNSIDGGWP
KETPPAARNGGFSSYHEPVSGSKLRKRADSFADHFSQAALFWHSMSEAEQAHIVAAYSFELSKVERQSIRER
EVNQILLNIDPQLAARVAANVGVQLAAPANPAPQPKPSPALSQMNLLSGDIRSRKVAILIADGVAESDVSDL
RDALRQEGADAKLIAPSASPVQAENGAELNPEGTWDGLPSVAFDAVFVPGGAASSQAIGADGRGLHYLLEAY
KHLKPVAFAGDAQALASQLSLPGDPGVLLGATATDVFPGLRQALMQHRIWQREAATKAIPA*
AnnotationID:283GeneID:273
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 18:06:46
Gene Name:katE
Confidence Code:2
GeneProduct:catalase HPII
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:hydroperoxidase HPII(III)
Functional Category Confidence Code:5
COGs:COG0753,cd00328,pfam00199
Secondary Functional Category(ies):transport of small molecules
EC Number:1.11.1.6
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58689.1| (AE016875) catalase [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 716

 Score =  988 bits (2554), Expect = 0.0
 Identities = 483/705 (68%), Positives = 570/705 (80%), Gaps = 6/705 (0%)

>gb|AAL20243.1| (AE008757) catalase; hydroperoxidase HPII(III) [Salmonella
           typhimurium LT2]
          Length = 750

 Score =  827 bits (2137), Expect = 0.0
 Identities = 418/696 (60%), Positives = 508/696 (72%), Gaps = 12/696 (1%)

>dbj|BAA15513.1| (D90816) Catalase (EC 1.11.1.6) HPII [Escherichia coli]
          Length = 753

 Score =  823 bits (2127), Expect = 0.0
 Identities = 415/695 (59%), Positives = 505/695 (72%), Gaps = 12/695 (1%)








 
Structural Features:
COG0753, KatE, Catalase [Inorganic ion transport and metabolism]
CD-Length = 496 residues, 100.0% aligned
Score =  725 bits (1874), Expect = 0.0
Identities = 305/508 (60%), Positives = 361/508 (71%), Gaps = 12/508 (2%)

cd00328, catalase, Catalase
CD-Length = 471 residues, 100.0% aligned
Score =  634 bits (1638), Expect = 0.0
Identities = 254/486 (52%), Positives = 317/486 (65%), Gaps = 16/486 (3%)

pfam00199, Catalase, Catalase.
CD-Length = 385 residues, 100.0% aligned
Score =  590 bits (1523), Expect = 2e-169
Identities = 227/390 (58%), Positives = 279/390 (71%), Gaps = 6/390 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17691




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32580




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:273_cdd.html


    		




 
URL:

















    ReferenceID:34427




  
Author/Investigator(s):
        von Ossowski I, Mulvey MR, Leco PA, Borys A, Loewen PC.





  
Title:
        Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII.




  
PubMed:
        1987146


MedLine:
        




    
Source:
J Bacteriol. 1991 Jan;173(2):514-20.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1987146

















    ReferenceID:34428




  
Author/Investigator(s):
        Engelmann S, Lindner C, Hecker M.





  
Title:
        Cloning, nucleotide sequence, and regulation of katE encoding a sigma B-dependent catalase in Bacillus subtilis.




  
PubMed:
        7559348


MedLine:
        




    
Source:
J Bacteriol. 1995 Oct;177(19):5598-605.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7559348

















    ReferenceID:34429




  
Author/Investigator(s):
        Milano A, De Rossi E, Gusberti L, Heym B, Marone P, Riccardi G.





  
Title:
        The katE gene, which encodes the catalase HPII of Mycobacterium avium.




  
PubMed:
        8821941


MedLine:
        




    
Source:
Mol Microbiol. 1996 Jan;19(1):113-23.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8821941









           
Homologs By Global Alignment 

           

       



     
Gene ID:273
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
452
                           PA2147_tr
                           translation of PA2147
                           709
                           99.29
                           99.85
                           0
                           3689.0
     

     
     
23913
                           gb|AAG05535.1|AE004642_2
                           (AE004642) catalase HPII [Pseudomonas aeruginosa PAO1]
                           709
                           99.29
                           99.85
                           0
                           3689.0
     

     
     
23914
                           gb|AAO58689.1|
                           (AE016875) catalase [Pseudomonas syringae pv. tomato str. DC3000]
                           719
                           67.45
                           79.55
                           13
                           2559.0
     

     
     
23916
                           gb|AAN65749.1|AE016201_1
                           (AE016774) catalase [Pseudomonas putida KT2440]
                           724
                           65.33
                           77.20
                           28
                           2470.0
     

     
     
23915
                           gb|AAB40866.1|
                           (U82622) stationary-phase inducible catalase C [Pseudomonas putida]
                           724
                           65.19
                           77.20
                           28
                           2467.0
     

     






      

          
GC ORFID: 43275How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2147Glimmer Score: 

          
Start: 1672474Stop: 1674603

          
Length: 2130


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2147 translation of PA2147Homolog Bit Score 1425.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3888 (ORF: BLASTX 1000.0), t_PA2147 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGCAGAACAACGAGCAGCGCAGCCAGGCGGCCGGCACCGACACCGTCGACCGTGGCAACAGCAAC 
GCCAAGCTGGAACAGCTGGAGGCCTATCGCGAGGACGCCACCGGAGAGGCCCTGAGCACCAATACCGGCACC 
CGCATCGCCGATAACCAGAACACCCTGAAGGCCGGCGAGCGCGGACCGTCGTTGCTCGAAGACTTCATCATG 
CGCGAGAAGATCACCCACTTCGACCACGAGCGCATTCCCGAGCGCGTGGTCCACGCTCGTGGCTCGGCGGCG 
CATGGCTACTTCGAGGCCTACGAGGACCTCAGCGACCTGACCAAGGCCGGCTTCCTCGCCGAGGCGGGCAAG 
CGTACCCCGGTCTTCGTGCGTTTCTCCACCGTGCAGGGGCCGCGCGGGTCCGCGGATACGGTGCGTGACGTA 
CGCGGCTTCGCCGTGAAGTTCTATACCGACGAAGGCAACTTCGACCTGGTCGGCAACAACATGCCGGTGTTC 
TTCATCCAGGATGCGATCAAGTTCCCCGACTTCGTCCATGCGGTGAAACCCGAACCGCACAACGAGATTCCC 
ACCGGCGCGTCTGCCCACGACACCTTCTGGGACTTCGTTTCGCTGACCCCGGAGTCGGCGCACATGGTCATG 
TGGCTGATGTCCGATCGCGCCATTCCGATCGCCTACCGCAACATGCAGGGCTTCGGCGTGCACACCTTCCGC 
CTGGTCAACGCGGCCGGCGAGAGCGTGCTGGTCAAGTTCCACTGGCGACCGAAGTCCGGGACCTGCTCGCTG 
GTCTGGGACGAGGCGCAGAAGCTCGCCGGCAAGGACCCCGACTTCAACCGGCGGACCCTCTGGGAGGACATC 
GAGAAGGGCGACTATCCCGAATGGGAGTTGGGCCTGCAGGTGATCCCGGAGAACCAGCAGGACAGCTTCGAC 
TTCGACCTGCTCGACCCCACCAAGCTGGTGCCCGAGGAGTTGGTGCCGGTAAGGGTGGTGGGGCGGATGGTA 
CTCAACCGCAACCCCGACAATTTCTTCGCCGAGACTGAGCAGGTGGCGTTCCACGTCGGCCACCTGGTCCCC 
GGAATCGACTTCACCAACGACCCGCTGTTGCAGGGTCGGCTGTTCTCCTATACCGACACCCAACTGCTGCGC 
CTGAGCGGGCCGAACTTCAACGAAATCCCGATCAACCGCCCGCTGTGCCCGTTCCACAACAACCAGCGCGAC 
GCGCCGCACCGGCAGACCATCAACCGCGGCCGGGCTTCCTATGAACCGAACTCGATCGACGGCGGCTGGCCG 
AAGGAAACCCCGCCGGCGGCGCGCAACGGCGGCTTCTCCAGCTACCACGAGCCGGTCAGCGGCAGCAAGCTG 
CGCAAGCGCGCCGACTCCTTCGCCGATCATTTCAGCCAGGCCGCATTGTTCTGGCACAGCATGAGCGAGGCC 
GAGCAGGCGCATATCGTCGCCGCCTACAGCTTCGAACTGTCCAAGGTCGAGCGGCAATCGATCCGTGAGCGC 
GAAGTCAACCAGATACTCCTCAACATTGATCCGCAACTGGCCGCCAGGGTCGCGGCGAACGTCGGTGTGCAG 
CTCGCCGCGCCGGCCAACCCGGCACCGCAGCCGAAGCCGTCGCCGGCGCTGAGCCAGATGAACCTGCTGTCC 
GGCGACATCCGTTCGCGCAAGGTGGCGATCCTGATCGCCGACGGCGTCGCCGAGAGCGACGTCAGCGACCTG 
CGCGACGCGCTCCGCCAGGAGGGCGCGGACGCCAAGCTGATCGCCCCCAGCGCTTCGCCGGTGCAGGCTGAA 
AACGGCGCCGAACTGAACCCGGAGGGAACCTGGGACGGCCTGCCGTCGGTAGCCTTCGACGCGGTCTTCGTG 
CCTGGCGGCGCGGCCAGCAGCCAGGCCATCGGCGCTGACGGACGCGGCCTGCACTACCTGCTGGAAGCCTAC 
AAGCACCTGAAGCCAGTGGCCTTCGCCGGCGATGCCCAGGCGCTGGCCAGCCAGCTTTCGTTGCCTGGCGAC 
CCCGGCGTGCTGCTCGGCGCCACGGCCACCGATGTCTTCCCCGGCCTGCGCCAGGCATTGATGCAGCACCGG 
ATCTGGCAGCGCGAGGCGGCGACCAAGGCGATCCCCGCCTGA