ViewGene
Locus Name:
GeneID:
Location:

GeneID:2729
TrivialName: PA14_43540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43540
PAO1 Ortholog Locus:PA1622
Sequence Length:861
Protein Length:286
Start: 3878154
Stop: 3877294
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05011.1|AE004590_2 (AE004590) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 286/286 (100%), Positives = 286/286 (100%)
Sequence:
ATGAGCCTGCAGGTCGAGGAAGTACGCATCAGCCTGCCGCACATCGAACTGGCCGCGCATCTGTTCGGTCCG
CCGGACGGCAAGCCGGTGATCGCCCTGCATGGCTGGCTGGACAACGCCATGAGCTTCTCGCGCCTGGCGCCG
AAGCTCGCTGGGCTGCGTATCGTCGCCCTCGACTTCGCCGGCCACGGGCATTCTGCGCATCGTGCCGAGGGT
GCCAGCTACCTGCTCTGGGACTACGCGCTGGACGTGCTGATGGTGGCCGAGCAACTGGGCTGGGAGCGGTTT
TCCCTGTTGGGGCACTCGATGGGCGCCATCGTCTCGGTGCTGCTCGCCGGGGCCTTGCCCGAGCGCATCGAG
CGGCTGGCGTTGATCGATGGCCTGATTCCCTACACTGGCGAAGCCGACAAGGCGCCGCAGAAGCTCGGCGAA
GCGCTGAAGGCGCAACTGGCGCTACGCCACAAGCGCAAGCCGGTCTATGCCGAGCTGGAAAAAGCCGTGGAA
GCGCGGATGCGCGGGGTCGGCGAGATCTCCCGGGAGGCCGCCGAACTGCTCGCCCAGCGCGGCCTGGAACCG
GTGCCCGGTGGCTATACCTGGCGCACCGACGCGCGCCTGACCCTACCGTCGCCGCTGCGCCTGACCCAGGCC
CACGCGCTGAACTTCGTGCGCAGCGTGGAATGCCCGGTCAGCCTGGTACTGGCCGAACAGGGCATGCTGGCG
GTGGAGCCGCGCATGCGGGCGCTGCTGGAGACCCTGCCGTTCGAGCGGCACCACCTGCCGGGCGGGCATCAC
CTGCATCTGGACGATGAGGCCGGGGCGCAGGCGGTGGCCAGAGTCTTCGCGGCCTTCTTCGCGCGCTGA
Translation:
MSLQVEEVRISLPHIELAAHLFGPPDGKPVIALHGWLDNAMSFSRLAPKLAGLRIVALDFAGHGHSAHRAEG
ASYLLWDYALDVLMVAEQLGWERFSLLGHSMGAIVSVLLAGALPERIERLALIDGLIPYTGEADKAPQKLGE
ALKAQLALRHKRKPVYAELEKAVEARMRGVGEISREAAELLAQRGLEPVPGGYTWRTDARLTLPSPLRLTQA
HALNFVRSVECPVSLVLAEQGMLAVEPRMRALLETLPFERHHLPGGHHLHLDDEAGAQAVARVFAAFFAR*
AnnotationID:2737GeneID:2729
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 15:03:21
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA1622
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative acyltransferases
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55734.1| (AE016863) hydrolase, alpha/beta fold family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 284

 Score =  379 bits (972), Expect = e-104
 Identities = 188/285 (65%), Positives = 225/285 (78%), Gaps = 3/285 (1%)

>gb|AAN69745.1|AE016611_3 (AE016789) hydrolase, alpha/beta fold family [Pseudomonas putida
           KT2440]
          Length = 284

 Score =  368 bits (945), Expect = e-101
 Identities = 191/284 (67%), Positives = 221/284 (77%), Gaps = 3/284 (1%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:5461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22605




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37266




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2729_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2729
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4460
                           PA1622_tr
                           translation of PA1622
                           286
                           99.99
                           99.99
                           0
                           1461.0
     

     
     
129283
                           gb|AAG05011.1|AE004590_2
                           (AE004590) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           286
                           99.99
                           99.99
                           0
                           1461.0
     

     
     
129285
                           gb|AAN69745.1|AE016611_3
                           (AE016789) hydrolase, alpha/beta fold family [Pseudomonas putida KT2440]
                           287
                           66.55
                           77.00
                           4
                           945.0
     

     
     
129284
                           gb|AAO55734.1|
                           (AE016863) hydrolase, alpha/beta fold family [Pseudomonas syringae pv. tomato str. DC3000]
                           287
                           65.50
                           78.39
                           4
                           974.0
     

     






      

          
GC ORFID: 45731How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1622Glimmer Score: 

          
Start: 1075755Stop: 1076615

          
Length: 861


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1622 translation of PA1622Homolog Bit Score 567.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1013 (ORF: BLASTX 377.0), t_PA1622 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCAGGTCGAGGAAGTACGCATCAGCCTGCCGCACATCGAACTGGCCGCGCATCTGTTCGGTCCG 
CCGGACGGCAAGCCGGTGATCGCCCTGCATGGCTGGCTGGACAACGCCATGAGCTTCTCGCGCCTGGCGCCG 
AAGCTCGCTGGGCTGCGTATCGTCGCCCTCGACTTCGCCGGCCACGGGCATTCTGCGCATCGTGCCGAGGGT 
GCCAGCTACCTGCTCTGGGACTACGCGCTGGACGTGCTGATGGTGGCCGAGCAACTGGGCTGGGAGCGGTTT 
TCCCTGTTGGGGCACTCGATGGGCGCCATCGTCTCGGTGCTGCTCGCCGGGGCCTTGCCCGAGCGCATCGAG 
CGGCTGGCGTTGATCGATGGCCTGATTCCCTACACTGGCGAAGCCGACAAGGCGCCGCAGAAGCTCGGCGAA 
GCGCTGAAGGCGCAACTGGCGCTACGCCACAAGCGCAAGCCGGTCTATGCCGAGCTGGAAAAAGCCGTGGAA 
GCGCGGATGCGCGGGGTCGGCGAGATCTCCCGGGAGGCCGCCGAACTGCTCGCCCAGCGCGGCCTGGAACCG 
GTGCCCGGTGGCTATACCTGGCGCACCGACGCGCGCCTGACCCTACCGTCGCCGCTGCGCCTGACCCAGGCC 
CACGCGCTGAACTTCGTGCGCAGCGTGGAATGCCCGGTCAGCCTGGTACTGGCCGAACAGGGCATGCTGGCG 
GTGGAGCCGCGCATGCGGGCGCTGCTGGAGACCCTGCCGTTCGAGCGGCACCACCTGCCGGGCGGGCATCAC 
CTGCATCTGGACGATGAGGCCGGGGCGCAGGCGGTGGCCAGAGTCTTCGCGGCCTTCTTCGCGCGCTGA