ViewGene
Locus Name:
GeneID:
Location:

GeneID:2728
TrivialName: PA14_49660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49660
PAO1 Ortholog Locus:PA1139
Sequence Length:849
Protein Length:282
Start: 4419622
Stop: 4418774
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04528.1|AE004543_12 (AE004543) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 281/282 (99%), Positives = 282/282 (100%)
Sequence:
ATGGCAATCCCAAGCATCCCGCGTTTGGCCGTACTGACGCTCGGACTGGCGCTCGCAGCGGCCGCCAGTGCC
GCCGACGAGGCGCAACTGGTCGAGGCGATCAACGCCTACCGTGGCCAGGTGCAGTCCTGCGGCGGCCAGGCC
AGCGGCGAACTGCCGCCGCTGGCCGCCGATCCGCGCCTGGCCTTGCCGGTGAATGCCGCCGGCGACCTGCAG
CAGGCGATGGCGCAGGCCGCCTACCCGATGGTCAACGTGCAGTCGATCAGCCTTTCCGGGCCGCGCGATGCC
GGCGCGGCGATGAAGGCGCTGCAGGAAAGCTTCTGCCGCGTGGTGCTCGACCCGCAATTCGTCGACGTCGGC
GTCAGCCGCCAGGACCGCGACTGGCGCATCGTCCTCGCCCGGCCATTGCTGCGCGGCGGCATGGGCGATTGG
CAGGCGGAAGGGCAGAAGCTCCTGGAACGGATCAACGCCGCCCGCGGGCAAGCCCGCCAGTGCGGTGGCAAG
CCCTACGCAGCGGCCCAGCCGCTGGCCTGGAACGCCACCCTTGGCGGCGCCGCCGAAGCGCATTCGCGGGCG
ATGGCCAACGGCAACTTCTTCGACCACCTCGACCGCGACGGCCGCACCCCCGGCGACCGCGCCGAGCTGGCC
GGCTACAGCGGCGGGCTGATCGGCGAAAACATCGCCGCCGGCCAGGACGGGGTGGACAAGGTGGTCGACGGC
TGGCTGGCCAGCCCGGGCCACTGCGCCAACCTGATGAACCCCGGCTACCGCGAGCTGGGCGCGGCCTACGCC
ACCGATCCGAAGAGTGACGCGGGAATCTACTGGACGGCCATGTTCGGTTCGCCCTGA
Translation:
MAIPSIPRLAVLTLGLALAAAASAADEAQLVEAINAYRGQVQSCGGQASGELPPLAADPRLALPVNAAGDLQ
QAMAQAAYPMVNVQSISLSGPRDAGAAMKALQESFCRVVLDPQFVDVGVSRQDRDWRIVLARPLLRGGMGDW
QAEGQKLLERINAARGQARQCGGKPYAAAQPLAWNATLGGAAEAHSRAMANGNFFDHLDRDGRTPGDRAELA
GYSGGLIGENIAAGQDGVDKVVDGWLASPGHCANLMNPGYRELGAAYATDPKSDAGIYWTAMFGSP*
AnnotationID:2736GeneID:2728
AnnotatorUID: danlee
Modification Date/Time: 2004-09-10 13:01:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1139
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2340
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2340, Uncharacterized protein with SCP/PR1 domains [Function unknown]
      CD-Length = 207 residues,  98.6% aligned
      Score =  140 bits (354), Expect = 2e-34






   
Genomic Context:






   
Comment:


















    ReferenceID:5459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2728
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4459
                           PA1139_tr
                           translation of PA1139
                           282
                           99.64
                           99.99
                           0
                           1461.0
     

     
     
129276
                           gb|AAG04528.1|AE004543_12
                           (AE004543) hypothetical protein PA1139 [Pseudomonas aeruginosa PAO1]
                           282
                           99.64
                           99.99
                           0
                           1461.0
     

     
     
129277
                           gb|AAO57053.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           293
                           67.57
                           78.83
                           11
                           1027.0
     

     
     
129278
                           gb|AAN69164.1|AE016550_6
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           285
                           65.96
                           79.29
                           5
                           998.0
     

     
     
129279
                           gb|AAO56152.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           323
                           39.31
                           54.79
                           44
                           651.0
     

     






      

          
GC ORFID: 45730How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1139Glimmer Score: 

          
Start: 534286Stop: 535134

          
Length: 849


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1139 translation of PA1139Homolog Bit Score 567.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene7997 (ORF: BLASTX 400.0), t_PA1139 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAATCCCAAGCATCCCGCGTTTGGCCGTACTGACGCTCGGACTGGCGCTCGCAGCGGCCGCCAGTGCC 
GCCGACGAGGCGCAACTGGTCGAGGCGATCAACGCCTACCGTGGCCAGGTGCAGTCCTGCGGCGGCCAGGCC 
AGCGGCGAACTGCCGCCGCTGGCCGCCGATCCGCGCCTGGCCTTGCCGGTGAATGCCGCCGGCGACCTGCAG 
CAGGCGATGGCGCAGGCCGCCTACCCGATGGTCAACGTGCAGTCGATCAGCCTTTCCGGGCCGCGCGATGCC 
GGCGCGGCGATGAAGGCGCTGCAGGAAAGCTTCTGCCGCGTGGTGCTCGACCCGCAATTCGTCGACGTCGGC 
GTCAGCCGCCAGGACCGCGACTGGCGCATCGTCCTCGCCCGGCCATTGCTGCGCGGCGGCATGGGCGATTGG 
CAGGCGGAAGGGCAGAAGCTCCTGGAACGGATCAACGCCGCCCGCGGGCAAGCCCGCCAGTGCGGTGGCAAG 
CCCTACGCAGCGGCCCAGCCGCTGGCCTGGAACGCCACCCTTGGCGGCGCCGCCGAAGCGCATTCGCGGGCG 
ATGGCCAACGGCAACTTCTTCGACCACCTCGACCGCGACGGCCGCACCCCCGGCGACCGCGCCGAGCTGGCC 
GGCTACAGCGGCGGGCTGATCGGCGAAAACATCGCCGCCGGCCAGGACGGGGTGGACAAGGTGGTCGACGGC 
TGGCTGGCCAGCCCGGGCCACTGCGCCAACCTGATGAACCCCGGCTACCGCGAGCTGGGCGCGGCCTACGCC 
ACCGATCCGAAGAGTGACGCGGGAATCTACTGGACGGCCATGTTCGGTTCGCCCTGA