ViewGene
Locus Name:
GeneID:
Location:

GeneID:2727
TrivialName: PA14_03300
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03300
PAO1 Ortholog Locus:PA1938
Sequence Length:846
Protein Length:281
Start: 298872
Stop: 299717
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82949.1| (AY273870) putative transposase [Pseudomonas aeruginosa]
Identities = 277/280 (98%), Positives = 278/280 (99%)
Sequence:
CTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGC
TACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCGCGTGGCGCTACGCAGCCAAGTCAACCAG
TTGTTCAGCCAGAGTCGGGGCTCGGCCGGCAGCCGCAGCATTCTGGGCATGCTGCGCGAAGAGGGCGTGACC
ATCGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAGCTGGGCCTGGTCAGCAAGCAACCGGGCTCGCACGCC
TACAAACAGGCCACGGTTGAGCGGCCGGATATCCCGAATCGGCTGAACCGCGAATTCGCGACCGAGCATCCC
AATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTG
GATCTGCTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAACTGGTGATCAAGGCCCTGGACATGGCC
TACGAACAGCGCGGCAGGCCACAGCAGGTGCTGTTCCATTCAGTCCAGGGCAGCCAGTACGCCAGCCGCCTG
TTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCG
CCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAG
GCCCAACGGGACATCAGTCATTACTTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGG
TTACCACCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGA
Translation:
MIDQLSEQESVEVVCSAFDVARSCYYVHRLRRRRVDARRVALRSQVNQLFSQSRGSAGSRSILGMLREEGVT
IGRFRVRRLMRELGLVSKQPGSHAYKQATVERPDIPNRLNREFATEHPNQVWCGDITYVWAQGRWHYLAAVL
DLLIGWAFSAKPDAELVIKALDMAYEQRGRPQQVLFHSVQGSQYASRLFRQRLWRYRMQQSMSRRGNCWDNS
PMERLFRSLKSEWVPSTGYLTAQEAQRDISHYLMHRYNWIRPHQFNDGLPPAVAEEKLNPLSGMG*
AnnotationID:2735GeneID:2727
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 17:05:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1938
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00665, COG2801
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15596175|ref|NP_249669.1|  hypothetical protein PA0978 [Pseudomonas aeruginosa PAO1]
     Length=275
     Score =  544 bits (1402),  Expect = 1e-153
     Identities = 265/275 (96%), Positives = 269/275 (97%), Gaps = 4/275 (1%)

gi|71558811|gb|AAZ38021.1|  ISPsy24, transposase orfB [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=304
     Score =  448 bits (1152),  Expect = 1e-124
     Identities = 208/284 (73%), Positives = 248/284 (87%), Gaps = 4/284 (1%)

gi|17547032|ref|NP_520434.1|  PUTATIVE TRANSPOSASE PROTEIN [Ralstonia solanacearum GMI1000]
     Length=284
     Score =  441 bits (1134),  Expect = 1e-122
     Identities = 209/284 (73%), Positives = 240/284 (84%), Gaps = 4/284 (1%)

gi|71554537|gb|AAZ33748.1|  ISPsy24, transposase orfB [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=273
     Score =  431 bits (1109),  Expect = 1e-119
     Identities = 199/272 (73%), Positives = 237/272 (87%), Gaps = 4/272 (1%)








 
Structural Features:
pfam00665, rve, Integrase core domain.
             CD-Length = 160 residues,  96.2% aligned
             Score =  102 bits (256), Expect = 4e-23

COG2801, Tra5, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
             CD-Length = 232 residues,  89.2% aligned
             Score = 89.7 bits (220), Expect = 4e-19






   
Genomic Context:






   
Comment:


















    ReferenceID:14655




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:22601




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2727
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
129196
                           gb|AAP82949.1|
                           (AY273870) putative transposase [Pseudomonas aeruginosa]
                           281
                           98.57
                           98.93
                           1
                           1461.0
     

     
     
4457
                           PA0978_tr
                           translation of PA0978
                           285
                           93.33
                           94.38
                           14
                           1408.0
     

     
     
4458
                           PA1938_tr
                           translation of PA1938
                           285
                           92.98
                           93.68
                           16
                           1396.0
     

     
     
129197
                           gb|AAG04367.1|AE004531_4
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           92.98
                           94.38
                           14
                           1405.0
     

     
     
129198
                           gb|AAG05326.1|AE004620_5
                           (AE004620) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           92.63
                           93.68
                           16
                           1393.0
     

     






      

          
GC ORFID: 45729How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS04Glimmer Score: 

          
Start: 6100213Stop: 6101058

          
Length: 846


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RS04 280 Homolog: PAO978 / Putative transposase; recombination-related / P. aeruginosa / PAO1 (AAG04367) translation of RS04Homolog Bit Score 568.0

          
Other Homologs:  t_PA0978 (ORF: BLASTX 545.0), t_PA1938 (ORF: BLASTX 541.0), psyr_15may02_Scaffold2_revised_gene3488 (ORF: BLASTX 212.0), psyr_15may02_Scaffold3_revised_gene4323 (ORF: BLASTX 135.0), psyr_15may02_Scaffold13_revised_gene2235 (ORF: BLASTX 135.0), psyr_15may02_Scaffold1_revised_gene1122 (ORF: BLASTX 104.0), t_RS04 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGATAGACCAGTTGAGTGAGCAGGAGTCGGTGGAAGTGGTCTGTTCAGCTTTCGATGTGGCGCGGTCTTGC 
TACTACGTCCACCGTCTTCGACGGCGGCGTGTCGATGCTCGCCGCGTGGCGCTACGCAGCCAAGTCAACCAG 
TTGTTCAGCCAGAGTCGGGGCTCGGCCGGCAGCCGCAGCATTCTGGGCATGCTGCGCGAAGAGGGCGTGACC 
ATCGGCCGTTTCCGAGTGCGTCGGTTGATGCGTGAGCTGGGCCTGGTCAGCAAGCAACCGGGCTCGCACGCC 
TACAAACAGGCCACGGTTGAGCGGCCGGATATCCCGAATCGGCTGAACCGCGAATTCGCGACCGAGCATCCC 
AATCAGGTGTGGTGTGGCGACATCACCTACGTCTGGGCGCAAGGCCGTTGGCACTACCTGGCCGCGGTGCTG 
GATCTGCTGATCGGCTGGGCGTTCTCGGCCAAGCCGGATGCCGAACTGGTGATCAAGGCCCTGGACATGGCC 
TACGAACAGCGCGGCAGGCCACAGCAGGTGCTGTTCCATTCAGTCCAGGGCAGCCAGTACGCCAGCCGCCTG 
TTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGCCGTCGGGGGAATTGCTGGGATAACTCG 
CCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAG 
GCCCAACGGGACATCAGTCATTACTTGATGCACCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGG 
TTACCACCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGA